Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9648 g9648.t8 TSS g9648.t8 4468363 4468363
chr_1 g9648 g9648.t8 isoform g9648.t8 4468426 4469361
chr_1 g9648 g9648.t8 exon g9648.t8.exon1 4468426 4468765
chr_1 g9648 g9648.t8 exon g9648.t8.exon2 4468832 4469361
chr_1 g9648 g9648.t8 cds g9648.t8.CDS1 4468833 4469360
chr_1 g9648 g9648.t8 TTS g9648.t8 4470095 4470095

Sequences

>g9648.t8 Gene=g9648 Length=870
ATGTCAAGAATATCTAATTTATCTATTAAACAGGTAATAAAATATTTTTTTAATTATTAC
ATTAAATATAAACTTTCGGTGATTTCAGCTGTCAAGAAAATTTGATGAAAAACTTTTGTG
TCCTAAAGAACATACATTAGAAGTGTTTAAAAATATTAAAAGAAACAATAATGATATTAA
TGCATTCATAACACTATCTGAGGAATTTGCATTAAAAAAGGCTGAAGAATCAGCTAATCG
AATTGCATTAGGAAAAAAATTGAAACTTGATGGCATTTTAGTAGCATGCAAAGATAATTT
TTGTACAAAAGGAATAAGAACGACATGTGGTTCTATGTTAAATGCTGAAAAATTTTGTAC
CAACTTATAATGCCACAGTTTATGATAAGTTGGAAAAGGCAGGTGCTATACTAGTTGGAA
AAACAAATTTGGATCAATATGGAATGGGTTCAGGCACAGTTGACTCTATTTTTGGGCCTA
CGAAAAATGTATGGAGTGAAAATTTAAACAATCCTAGAATATGTGGAGGTTCTAGTGGTG
GTTCCGCTTCTGCTGTTGCTGCCAATTTTTGTTCTACTGCTCTTGGGTCAGATACTGGCG
GATCTACTCGCAATCCTGCATCATATTCTGGTGTGATTGGTTTTAAACCTACATATGGTT
TACTTTCAAGACATGGTTTGATTCCATTAGTCAATTCTATGGATGTTCCAGGAATTTTAA
CAAAAACCGTTGATGATTGTGTAGACATTTTTAATACGATTGCAGGACCAGATGATTTAG
ATTCAACCACAATTAAAAAATCATTTAATCCAATTGAATTGTCTGAAAATTTTAATTTAA
AAAATGTTAAAATTGGTATACCTAAAGAAT

>g9648.t8 Gene=g9648 Length=176
MLKNFVPTYNATVYDKLEKAGAILVGKTNLDQYGMGSGTVDSIFGPTKNVWSENLNNPRI
CGGSSGGSASAVAANFCSTALGSDTGGSTRNPASYSGVIGFKPTYGLLSRHGLIPLVNSM
DVPGILTKTVDDCVDIFNTIAGPDDLDSTTIKKSFNPIELSENFNLKNVKIGIPKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9648.t8 Gene3D G3DSA:3.90.1300.10 Amidase signature (AS) enzymes 1 176 0
2 g9648.t8 PANTHER PTHR11895 TRANSAMIDASE 1 176 0
3 g9648.t8 PANTHER PTHR11895:SF7 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 1 176 0
1 g9648.t8 Pfam PF01425 Amidase 1 176 0
4 g9648.t8 SUPERFAMILY SSF75304 Amidase signature (AS) enzymes 1 176 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed