General information for g9649.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein kinase ATR.
Parent gene
- The parent gene g9649 is located on chr_1: 4478125..4479451 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9649 | g9649.t1 | isoform | g9649.t1 | 4470060 | 4478125 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon1 | 4470060 | 4470438 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS1 | 4470060 | 4470438 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon2 | 4470492 | 4470876 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS2 | 4470492 | 4470876 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon3 | 4470938 | 4475042 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS3 | 4470938 | 4475042 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon4 | 4475103 | 4475192 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS4 | 4475103 | 4475192 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon5 | 4475250 | 4477603 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS5 | 4475250 | 4477603 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon6 | 4477668 | 4477804 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS6 | 4477668 | 4477804 |
| chr_1 | g9649 | g9649.t1 | exon | g9649.t1.exon7 | 4477860 | 4478125 |
| chr_1 | g9649 | g9649.t1 | cds | g9649.t1.CDS7 | 4477860 | 4478125 |
| chr_1 | g9649 | g9649.t1 | TSS | g9649.t1 | NA | NA |
| chr_1 | g9649 | g9649.t1 | TTS | g9649.t1 | NA | NA |
Sequences
>g9649.t1 Gene=g9649 Length=7716
ATGGCAGAATGTACAGTGACAATGCCAATATTGAGAAAACTCAATGATTTGTTTGTGAAA
TTTATAAAGAATGATAGTAAAAATGGGATTTTCTTCGAAAAAGAATCTCTTGAAAAAGTT
CTTTACTTTTTGAATACTAATTTTCTATCAATTTGCAATGATATTACATCAACATCATTA
TTAGAAGAAAGAGAACATGCCTGCGATCAACTTAGTTGGATTTTCAGCAAACTTCTCTTT
ATCACACTACATGACAATAATAATGATTTTACACAACAGGTTCAAGAAATCACAAGCAAA
ATTTTACCTAAAGGACAACATTTATCAGTCAAATGGTTCCATAAATTAACAAAACTTCAC
CTAGATCTCCTCAACAAAAGTCTTGAAATATTTTCTCATTTTGAAATTAATATTCCCCGT
TATGACATAGAAAACAATACGCTGTTATATTCAAAATCTGTTATCAATGATGAAATACAG
TTTGAAAAGTTGATACCTTTTTGTCTCTATAATCTTGGATGTGCAATTGATTTAGCACCA
GCAACTATCGCTTCCTTATCAAAATACAATATTCCAGAAATAGTATTAAAAATTTTTGAT
GACAATGAAATGCAAATTCGAATATCGTGTATTATTTTTCTTACAATCTATTATAAAAAC
ACTGAAACAAGTGGAATTGACTGCTTCAAGCTTATAGAAAATATATCAAATACATATCGA
ATAATGACTCAAAATGATAACACATGTGGAAAATCTCTAGAAAAAGCTTTCGATTTATCG
ATAGTCAAATTAGTCAAGCTTTTAATGGATCATATCAAATCATTTAGAATAAACCTAAAT
AACAGCATTATTACAGAAAAACTCATAGCTACTGTTATAAAACTCATTTATTTTGAACTA
AAATTTAAGGAACAACACAGACTAACATCAAATACTGCACTTTTTATAGAGTTCATTTAT
TATATTCTTATAACAATTGATTCTGTCGATGAAAACTATATTAAAAGTTTCAAAAATATT
CAACATCTTTGTGTTGTCTATGATAAAATTTTGCTACTCTCACAATTTCAAATTATATTG
GAAATTGAACAAGCATGCAACTTTTCAAGTAAATTAACTTCAATTAGTCCAACATGGAAT
AAAATTCATAATACTTTATTAGAAAAAGTCAATTCAATCAATGACCACATGACGTGTGAC
GAAGAATATGAAGATACTATTTCATGGATAAATACAGCATTTTTACTTGCACAGAATATA
AATTTTCTTTTTATATTTCGACATCAATTAATGCACGAAAGAAATAAATTATGCCCAATT
TGCGAGAGAAATAATATCTCAACATTATCAAACGATAATTTAATGATGAAATTTAATGAT
TGGAGCTATCAACACATTCAACTAGATTTCTTTGATGATTTATCATCTTTAATTCATCAA
CTGATTCAAAAAGTTAAATTCAAAAGTTGGTTTTATGGATCAACAATCAATTTAATGAAC
ATATTTACATCAGTATTTTCTTTTCTACCGAAACTAACCGATGAAGATAAGCTCTTTATG
ATGACTGTTATCATTCTACCGTTTTATAATTCAATCGAAAAATATGATAAAATGAATAAG
TCTGCCGAATTCAAGAAAATGCAGAATGCATCGTCACATGGAATGAAAATGTTCAGCAAA
GGACTTTCTTTAAGTGAACAATTTGAGTTTAAACGTGAATGTATTCGATTATTTGCTCAA
TTAAGACTTAACAAAATCAATTCAACATCAATGTGGCTCAAAAGTAGTTTTATGCGTTTA
GTTTTTACAGAAGAAGGTAAAGATGTTCAATTTGTGTTTCTTCAATATTTCAAAGACATG
CTTATTACAAATTTTGAGGTAATTGAAAGCTTTTTGAGCCTATATCAAAGTTTAAGGTTG
AATCAAAGTGATATTTTACAAATAAAAGAATTAAAAGACATTTTATGTTTAACGGATAAA
AACGTTATAATTCTAAAAACTCGAAAAAATACCTATGATGTCTTGTGTGAGAAGTGTTCA
AACGATTCAAATGAAATGCATGTAGTTGACAGATATCTCATGTATATTTCAAAACACAAA
TCATATTTGATGTCTATTTGTAGTTTTGATAAAGATTTAAATATTTCCATCAATTCAAAT
TTACTTAATGATAAAACCAATGAATTTTATGCACATTTTATCAAAAACATTCCTCCATCA
ATAGAGCATTCAATCGATTTTATTGAAGTGATTGACAACAAAGGAGAAATACTTTTTAAC
ATCATTCTTAAAATGGATGAAAATATTTTAAAGGAAACTAATTTTTACCAAAAAAATATA
ATTTTGAGCATTCAAAGGTCAAAATTGTCAGACAATAATATAAGATTGTTATTTGAAAAT
TTTCTGGAAAAGTTTTCTGAATTGACCCTTCAAAGTTGTCAAAACTCGGGCAATTTATCT
ATACAATACTATATTGCTAATATGATTGCCACATTAGGATCGAATATGAAAAATAGCATT
TTGAATATTGAAAAAGTCTCATTAAAATGTCTCAAATTGTTGATATATTTTATGATAATT
GGAGAACTTGAAGTCAAAGGTGTTGCAATAAATCTTGCCTTTCGAATGCTTGAACAAAAT
GGAATAATTTTTCAAACATTTCTGAATTGGTATAAAAAATCTCTTTTGGATATCATTTGC
ACATTGTGTCTCTCAATAAGTTTAGACGAGGAAAATTTTACACAAAATCTTTTTAACTTT
CTAAAAAACGTACATATTTCGGAACCAATAACATTTGTAAGATCAAACATTCATATCATA
ATTGGAGCAATTCTTCCATTTTGTGTGGAAAATAACCAATTTCATCATATACGAACAATG
TTAAAATCGTGCAAAATCTCATTAAATGAAGCAATTAGAGATTCAAGTTTTGTTCTTCAT
GAAATGTTATATTCAATGGAAAATAACAAAAAGAAATATTTTATTGATTTCATTGAGAAT
AATATTGGTATGTCATTTAAAGAATTACTACAATTAGAAAGATCAACTATACTTGAAAGA
GCTTGTGCAAAATATTGCAACAATCAGTCTTATGTCATCAATGTTGTTCAAGAACTTGGT
GGTGATGAAAAATTCAATACGTCAGATTTAGATAAAATTGCCGATTATATAGCAACTAAA
TTCCTTGCAGTTCTCAATTATTTTGAAAACGAACTTAAATCTACGACAACTACTAAAGCC
TTAAAGCACTCGATCATTTTAAGTTTAGGAGATTTTATACGATTTCTTGGTGAACGTATT
TCAAATTTATATTTTAAAATAATGAGTATTTTAAAAGAAATTACAAAGCTCACAGATATA
AATGGAAAAGAAAGTTGCATTGAAGTATGGAAAATTTTTGCTTTACATTGTAATTCATCT
ACTATTGGTTCATTTTTGAGTGTCATTTTTGTCTCATTAGAAGACTATTTGAATGAGTAC
CCTCAAAAAGTTGAAAACATTTGTCTTCAATTTATTAACAATAATGCAAGTTTATTGAGC
AGATATTTTCCAGATTTATTTTTTATAACAAAAACTAGACATAGTGATGCCGTTAAAAAT
GCAATATTGCATCAAATACAAAGTCAAAGACATTCAGATAAAAATGAGTTTGAACTCAAT
TTGGAACTATTATTAAAGCATTTGAAAAATGAAAATACAGATTCGGATGTAAAATTCTAT
TTGCTTTTATACCTTGAAGATCTTATCAAAAATGATAGAAAAAAATTCAACGAGTTCATC
TTTTCGCATTCAACTATAGTGGAAAATCTTGTGTGTCTTTTGGCAAGTGGTAGTAAAAAT
ACATATAATGATCGATTGAAACTTCAAACAGCAAAATGTTTTGGTGAATTGGGTGCGATT
AGGCCTTTTCAACAAAAAGAGAATTATGCAACTCATAATTTTATATCAACTATTCATTCT
AATGAATTTGCAAAATCTCTTTTAAAAATAATATGTAAATATTATAAAGACGTAATTGAC
ATGAGAAACATTCAAGCTTTATCACTTGCTGTTCAAGGAATTTTTAATGAACGTGAAGTT
GATACTAAACATGAAATTTGGAAATATTTGTCTGAAGAAAGTCATGTGTTATTTCGTCCA
CTTTTAACATCTCGTTATACTCCAGCAAATCATCAAGCACCATTTACCAATGAAGAGACA
ATTTTCTGGAATAGAGCACAAACTGAAACAAATTGGGCTTTTATATTAGCAGAAACAATA
GCACAAGGAATAGAAAATGATGAAACAAGTAATTATTTGAAAGATTTATTGCCAAGTATG
CGTGAAAATCAAGAAATATCGTTATTCTTAATTCCAAAAATTGTGCTTGAATATTTCAAA
TCAAACACTACAAAAGAATATGATAGTCTTTTACTTCAAGAATTCCAACTTATTTTTAAA
TTAGTCATGGATAGAAAGATGTTTACTGAATTTAGTAAAGAAGAACTTAAATTCACATAT
ATTGCAGATTATGGTTTTCAGCCTGTAAAAAAAAAGTCTGAAGATAATAGTTTGGATAAA
ATTCAAGCTACAATTGTAAAAACTGCTAAAATGATATTTGAAATATGGGACTCGCTTACA
CTTTTTATACAAAGACACAATACACAAACGTCAACTATTGAACGCATTAAGCATTTACAA
AATCAATTTAGTCTACTTACTTTGGCTGAAGTAACATTTAAATGTGAAGAATATGAAAGA
TCATTAGTATTTTTAGAACGTTATATTCTGCAATTAGAGAATCGCGAAGAAGCACTATCA
TTTTTAATAAAAGTTTACGCTAAACTTCATGAACCAGATCTTGTAGATGGTGTTCGATGG
TTGAGAAAAACAGATTGGTCAATATCAGATAAAATATTCATTAGTGAAGTAACTGGAAAT
TTAGAAAATTGTCCAATATATTTTGAAATGAAATTAAAGGAGCCTGCAATAAATCAAAGT
GAAATAGAAAATATAATAAAAATTCACATACAAGCTAATCAAAATGCAGATGCTATACTT
TATTGTAAAAATCAACTTCAAAAATTATATGCTGCCAATTCGGAACAAACTTATGCTGAT
GAAATGATGGCGGAACCTTTATGGCGACTTTCAAGATGGGATGATCTTGAAGAGTTATTG
CTTGACAATCCACATTTAAAAGTGAATAATCATTCAAATTGGAATATTTCCTGTGGTAAT
TTGATGCTTAAATTCCGTCGTTTTGATGGTGAAGGTTTTTGGGAAGAATTAAATAAAGCA
CGTTTGTCAGTGATGGATAATTTTAAAATATTTGATTCTGATCACTTAATGTATAATGGT
AATTATGATGATATTATACATCTTCACATGCTTACTGAATTTGAAAAGATTCATGAAGCT
TTCGAACATATACAAAGCAAAAAAACAATAGATGCTGCCAATAAAATACTTAAGAATCTC
ATCAATGAATTGGACACTCGTCGCAAATTACTTAAACCATCATTAAATGTAATAGAATCA
ACTCTTGCGATTAGAAGATCACTCCTTTCAATGATGAAATCTAAACTGCAAATCATTTTT
ACGAAACCAAATGAAATTAAATATATAGCTAATGAAATTGATAAACAGATTGGAAAAACC
TGGACAGATGCTTCGAAAATTGCATGCAAGCAAAAGCATTTTATTCAAACTAATGCATAT
TTAATTGAAGCATCACATTACAAGTCTTATGATTTTTTGATTGAAAAACCAAAATATCTT
TGGAAAAAAGGTGAACATGTGAGTGCTCTTCGTACATTAGAATTGAATCTTGAAGATTTA
CAAAAATCATGCACAGGAAGAAAAACACCAGAAATGATCAAATTATTATCGAGAGTACAA
TTACGTATAGCTAAGAACTACGCAGAAATGAAATATGTTGATTTTGATACAAACAAAGAA
CTTTTTAAAAAGGCAATTATTGAAGGCGCAGAAAATGAAAAATGTTATCTTCAACTCGCT
GATTATATGGATAGATATTATTTCTCTCTTTGTGAAAATAATAATACAAGCAAAAATGAA
ATTTCGTTACCTCACTTTGAAAAACTTCTCGAGATAATGCGAGCATATGGAGATAGTATG
AAATATGGCTCAGTGCATGTCTTGCAAAGTATGTCAAGATTCCTTCAAATTTGGCTTGAC
TCTTCCTCAATGTGTGAACAACAAAATTCAAAGTATAGATCGAGAGAAAACATTACTATT
GTCAGCCAAATGAATTCATATTTGAAAGAGACAATCAATGTGATTTCTATTGATTGCTTC
TATACTGCCTTTTCTCAACTTATCAGTAGATTGTGTCATCCATCAAACGATGTATTCAAA
ATCATTAAAAGTATCATTTTGAAACTTCTTGAAAAATATCCACTTCAATCAATGTGGTAT
ATTGTTCCAGGATTAAAAAGTAAATCAAATTTCCGACAAAAAAGAACAAGTGAGATTTTT
GAAAGAATGGGAAATGACATGAATATCAAAAGTTTTGGTATAGTTATTGATAGAATTATG
AATTTTACTCAAACAAAAGCCACGGCAGATAAATCGTATATGGCTAAAATTCACCCTGAA
ATTAATAAAATTTTAAAAAGTTTCAATATCTTAATGCCATTGCAACAAAATTTGCACATA
ACACGAAATACAACACTTGACAACAGTGGTGTTCTTATACAGAGTATGGATATAAATTTT
GAAGTTATGCATTCACTTCAAAAACCCAAGAAAATTACTTTTATTGGAAGCGATGGTCAG
CAGTATTCAATGCTGTTGAAATTTAAGGATGACTTGAGAATTGATTTTAGATTCTTGGAA
TTTGTAAAAGTAGTAAATGATTTTTATCGAAAAGATTCAGACGCAAGCCAACGTAGTTTA
ATTGCCAGAACATATTCAGTTATTCCGTTGAACGAAGAATTGGGAATGATTGAATGGATT
CCAAATTTGAAAACTTTTAAAGCCATCATCAGTAGTCAATATGCTTTAGCAAAAATCAAA
GTACCATCAGGCAGCAAAGAGATTAATCTTTTGAGTGAAAAAATGAATGCAGCAACTGAT
AAAGTGGCTCAATTCAATTGTCTTAAGAAAATGTTTCCTCCTATTCTTGGACAGTGGTTT
CTGCATCATTTTTCAAGTGCACAGTGCTATTTTCGAGCACGTCAAAATTATGTCAAATCA
GTTGCTATTATGAGCATGATTGGATACATCATGGGTTTAGGCGATCGACATTGCGAAAAT
ATTTTATTTGATATTCATTCTGGAGAAATAGTACACGTGGATTTTAATTGCTTGTTTCAT
AAAGGAGAAAAACTTGGCGTTCCCGAAAGAGTTCCATTTAGATTGACAAATTCAATGATT
GAAGCCATGGGTATTTTGGGTGTTGAAGGACCTTTTAAAAGATGCTGTGAAATTACATTA
AAAATAATGCATAATGAGATTCACACTTTAATGTCTTATTTGCGACCTTTTATTTATGAC
CCAATGATTTCGAAAAACGAGAAAGAAAATTTTGATCCTAATGCTTTAGAAAATCTTCAA
TGTATCGAAAAGAAACTGAAAGGAATTGTTAGACGGTTCAAGAAATTTACAGAAGTACCA
ATATCAATTGAAGGAAATGTTAATATGATTTTAAAGGAAGCAACATCTGATGAAAATTTA
TCATTAATGTACTTTCATTGGAGTCCATTTATTTGA
>g9649.t1 Gene=g9649 Length=2571
MAECTVTMPILRKLNDLFVKFIKNDSKNGIFFEKESLEKVLYFLNTNFLSICNDITSTSL
LEEREHACDQLSWIFSKLLFITLHDNNNDFTQQVQEITSKILPKGQHLSVKWFHKLTKLH
LDLLNKSLEIFSHFEINIPRYDIENNTLLYSKSVINDEIQFEKLIPFCLYNLGCAIDLAP
ATIASLSKYNIPEIVLKIFDDNEMQIRISCIIFLTIYYKNTETSGIDCFKLIENISNTYR
IMTQNDNTCGKSLEKAFDLSIVKLVKLLMDHIKSFRINLNNSIITEKLIATVIKLIYFEL
KFKEQHRLTSNTALFIEFIYYILITIDSVDENYIKSFKNIQHLCVVYDKILLLSQFQIIL
EIEQACNFSSKLTSISPTWNKIHNTLLEKVNSINDHMTCDEEYEDTISWINTAFLLAQNI
NFLFIFRHQLMHERNKLCPICERNNISTLSNDNLMMKFNDWSYQHIQLDFFDDLSSLIHQ
LIQKVKFKSWFYGSTINLMNIFTSVFSFLPKLTDEDKLFMMTVIILPFYNSIEKYDKMNK
SAEFKKMQNASSHGMKMFSKGLSLSEQFEFKRECIRLFAQLRLNKINSTSMWLKSSFMRL
VFTEEGKDVQFVFLQYFKDMLITNFEVIESFLSLYQSLRLNQSDILQIKELKDILCLTDK
NVIILKTRKNTYDVLCEKCSNDSNEMHVVDRYLMYISKHKSYLMSICSFDKDLNISINSN
LLNDKTNEFYAHFIKNIPPSIEHSIDFIEVIDNKGEILFNIILKMDENILKETNFYQKNI
ILSIQRSKLSDNNIRLLFENFLEKFSELTLQSCQNSGNLSIQYYIANMIATLGSNMKNSI
LNIEKVSLKCLKLLIYFMIIGELEVKGVAINLAFRMLEQNGIIFQTFLNWYKKSLLDIIC
TLCLSISLDEENFTQNLFNFLKNVHISEPITFVRSNIHIIIGAILPFCVENNQFHHIRTM
LKSCKISLNEAIRDSSFVLHEMLYSMENNKKKYFIDFIENNIGMSFKELLQLERSTILER
ACAKYCNNQSYVINVVQELGGDEKFNTSDLDKIADYIATKFLAVLNYFENELKSTTTTKA
LKHSIILSLGDFIRFLGERISNLYFKIMSILKEITKLTDINGKESCIEVWKIFALHCNSS
TIGSFLSVIFVSLEDYLNEYPQKVENICLQFINNNASLLSRYFPDLFFITKTRHSDAVKN
AILHQIQSQRHSDKNEFELNLELLLKHLKNENTDSDVKFYLLLYLEDLIKNDRKKFNEFI
FSHSTIVENLVCLLASGSKNTYNDRLKLQTAKCFGELGAIRPFQQKENYATHNFISTIHS
NEFAKSLLKIICKYYKDVIDMRNIQALSLAVQGIFNEREVDTKHEIWKYLSEESHVLFRP
LLTSRYTPANHQAPFTNEETIFWNRAQTETNWAFILAETIAQGIENDETSNYLKDLLPSM
RENQEISLFLIPKIVLEYFKSNTTKEYDSLLLQEFQLIFKLVMDRKMFTEFSKEELKFTY
IADYGFQPVKKKSEDNSLDKIQATIVKTAKMIFEIWDSLTLFIQRHNTQTSTIERIKHLQ
NQFSLLTLAEVTFKCEEYERSLVFLERYILQLENREEALSFLIKVYAKLHEPDLVDGVRW
LRKTDWSISDKIFISEVTGNLENCPIYFEMKLKEPAINQSEIENIIKIHIQANQNADAIL
YCKNQLQKLYAANSEQTYADEMMAEPLWRLSRWDDLEELLLDNPHLKVNNHSNWNISCGN
LMLKFRRFDGEGFWEELNKARLSVMDNFKIFDSDHLMYNGNYDDIIHLHMLTEFEKIHEA
FEHIQSKKTIDAANKILKNLINELDTRRKLLKPSLNVIESTLAIRRSLLSMMKSKLQIIF
TKPNEIKYIANEIDKQIGKTWTDASKIACKQKHFIQTNAYLIEASHYKSYDFLIEKPKYL
WKKGEHVSALRTLELNLEDLQKSCTGRKTPEMIKLLSRVQLRIAKNYAEMKYVDFDTNKE
LFKKAIIEGAENEKCYLQLADYMDRYYFSLCENNNTSKNEISLPHFEKLLEIMRAYGDSM
KYGSVHVLQSMSRFLQIWLDSSSMCEQQNSKYRSRENITIVSQMNSYLKETINVISIDCF
YTAFSQLISRLCHPSNDVFKIIKSIILKLLEKYPLQSMWYIVPGLKSKSNFRQKRTSEIF
ERMGNDMNIKSFGIVIDRIMNFTQTKATADKSYMAKIHPEINKILKSFNILMPLQQNLHI
TRNTTLDNSGVLIQSMDINFEVMHSLQKPKKITFIGSDGQQYSMLLKFKDDLRIDFRFLE
FVKVVNDFYRKDSDASQRSLIARTYSVIPLNEELGMIEWIPNLKTFKAIISSQYALAKIK
VPSGSKEINLLSEKMNAATDKVAQFNCLKKMFPPILGQWFLHHFSSAQCYFRARQNYVKS
VAIMSMIGYIMGLGDRHCENILFDIHSGEIVHVDFNCLFHKGEKLGVPERVPFRLTNSMI
EAMGILGVEGPFKRCCEITLKIMHNEIHTLMSYLRPFIYDPMISKNEKENFDPNALENLQ
CIEKKLKGIVRRFKKFTEVPISIEGNVNMILKEATSDENLSLMYFHWSPFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9649.t1 | CDD | cd00892 | PIKKc_ATR | 2233 | 2503 | 2.24835E-118 |
| 10 | g9649.t1 | Coils | Coil | Coil | 1575 | 1595 | - |
| 8 | g9649.t1 | Gene3D | G3DSA:3.30.1010.10 | - | 2168 | 2320 | 3.0E-12 |
| 9 | g9649.t1 | Gene3D | G3DSA:1.10.1070.11 | - | 2373 | 2544 | 1.5E-32 |
| 4 | g9649.t1 | PANTHER | PTHR11139 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED | 281 | 2567 | 2.6E-210 |
| 5 | g9649.t1 | PANTHER | PTHR11139:SF69 | SERINE/THREONINE-PROTEIN KINASE ATR | 281 | 2567 | 2.6E-210 |
| 1 | g9649.t1 | Pfam | PF08064 | UME (NUC010) domain | 1057 | 1153 | 3.8E-9 |
| 2 | g9649.t1 | Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 2261 | 2504 | 2.0E-49 |
| 3 | g9649.t1 | Pfam | PF02260 | FATC domain | 2540 | 2570 | 2.1E-7 |
| 12 | g9649.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 406 | - |
| 15 | g9649.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 407 | 426 | - |
| 11 | g9649.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 427 | 489 | - |
| 14 | g9649.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 490 | 509 | - |
| 13 | g9649.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 510 | 2571 | - |
| 20 | g9649.t1 | ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 2400 | 2420 | - |
| 22 | g9649.t1 | ProSiteProfiles | PS51189 | FAT domain profile. | 1567 | 2147 | 16.742 |
| 21 | g9649.t1 | ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 2262 | 2571 | 48.872 |
| 23 | g9649.t1 | ProSiteProfiles | PS51190 | FATC domain profile. | 2539 | 2571 | 12.183 |
| 18 | g9649.t1 | SMART | SM00802 | UME_cls | 1053 | 1159 | 1.2E-8 |
| 19 | g9649.t1 | SMART | SM00146 | pi3k_hr1_6 | 2263 | 2550 | 6.0E-65 |
| 17 | g9649.t1 | SMART | SM01343 | FATC_2 | 2539 | 2571 | 2.6E-7 |
| 6 | g9649.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 668 | 1333 | 1.47E-7 |
| 7 | g9649.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2190 | 2508 | 8.26E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0004674 | protein serine/threonine kinase activity | MF |
| GO:0016301 | kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K06640 (serine/threonine-protein kinase ATR)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
