General information for g9650.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein maelstrom-like protein.
Parent gene
- The parent gene g9650 is located on chr_1: 4479451..4481309 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9650 | g9650.t1 | TSS | g9650.t1 | 4478710 | 4478710 |
| chr_1 | g9650 | g9650.t1 | isoform | g9650.t1 | 4478711 | 4481309 |
| chr_1 | g9650 | g9650.t1 | exon | g9650.t1.exon1 | 4478711 | 4478935 |
| chr_1 | g9650 | g9650.t1 | cds | g9650.t1.CDS1 | 4478711 | 4478935 |
| chr_1 | g9650 | g9650.t1 | exon | g9650.t1.exon2 | 4479105 | 4479303 |
| chr_1 | g9650 | g9650.t1 | cds | g9650.t1.CDS2 | 4479105 | 4479303 |
| chr_1 | g9650 | g9650.t1 | exon | g9650.t1.exon3 | 4479598 | 4479608 |
| chr_1 | g9650 | g9650.t1 | cds | g9650.t1.CDS3 | 4479598 | 4479608 |
| chr_1 | g9650 | g9650.t1 | exon | g9650.t1.exon4 | 4479676 | 4480153 |
| chr_1 | g9650 | g9650.t1 | cds | g9650.t1.CDS4 | 4479676 | 4480153 |
| chr_1 | g9650 | g9650.t1 | exon | g9650.t1.exon5 | 4480214 | 4480423 |
| chr_1 | g9650 | g9650.t1 | cds | g9650.t1.CDS5 | 4480214 | 4480423 |
| chr_1 | g9650 | g9650.t1 | exon | g9650.t1.exon6 | 4480489 | 4481309 |
| chr_1 | g9650 | g9650.t1 | cds | g9650.t1.CDS6 | 4480489 | 4481309 |
| chr_1 | g9650 | g9650.t1 | TTS | g9650.t1 | NA | NA |
Sequences
>g9650.t1 Gene=g9650 Length=1944
ATGGCCGATACAGCAGCAAAAACAAAAGCTGCCCCAGCAGCAAAAAAAGAAAAGAAACCA
GCGGCTGAAGCTGCACCAGCAAAACCTAAAGCAAAGGCACCAGCAGAACCAAAAGCTGTA
ACTCCACGACCATTCAAACGTTATGGTAGATTATGGGCTAAGGCTGTCTTTACTGGTTTC
AAGCGTGGCTTGAGAAATCAACACGAGAATCACGCTCTTCTCAAGATTGAAGGATCACGT
AGCCGAAAAACATCATTGTTCTATGTTGGTAAACGCTGTGTATTTGTTTACAAAGGTAAA
TCCAAAAAATCATCGCCAACAAATCCAAAACACAAGTCTCGTCTGCGAGCAATTTGGGGA
AAAGTTACCCGACTTCACGGTAATAATGGCAGCGTTCGTGCTCGCTTCAAGACAAATTTG
CCAGCATATAAGGAAAAAATAGAACAAAAAATGCCAAAATCAAATGGATTTTGTAATTTT
ATGTTTTCTCTGAAGAAGCAGTTAGGACAAGAGATTTCAATAAACGAATTACAATTGATC
GCTGGTGAAAAATGGAAGAATTTGAGTGAAGAGGAAAGAGCAACATATAAAGGAAATAAA
ACAGAACCAGTAACGCAGAAGAAATATAATTGCGTTGGAACACTTGTTGAGAGTCAAAGT
CGTTTATTAAATCAAAAACGTATCAATGATGAGAAAATAACAATGTACATTGAACAAATG
ATACAAAAAGCGATCGAAAAAGAAACAAATGGATTATTTTCTCAAGTCTTTTACTTTTTT
TCTGCATCATACTTTGCAAGAAAACGAAATGAAGACATCTTTCCAGCTGAAATAGCTCTT
GCAAAATTCTCACTAAAAGCCGGTATAATCGATAAAATGCATATGATGATCAATCCTGGT
GAATTACCTTTAGGATATCCTGGAGAAGCTCTATTTCATGCTAAACGAACTCATCGACTT
GATCTTCCACCAAATATTCCTGGTGAAAAAAGCTATAAAAAAATTCTGGATGCAATAATT
GAATTTGTCGGAGCAGAGCGATTTACTTCAGAACATATTCCACCGTTTTTTACTTATGAA
GAAATGGAAGATGATGATTTCTTAGCAGCTGAAATGACTTTAGATAAAATTGCAACTGAG
AATGACCAATATAATGCATTTCGAGTATATAAAGCTGATACATTGTTTTTCATTCTACAC
AAGCATGTGATTGAAAATCGAAACTTTTTTTATGGTTCAAATGATAAATCATTTGCCTCT
GTTGTTACTGCTTGGGATATGCTGCGACGTGATGATTTTCGATATAGTTTAATTGGATGC
GATAAACATAATGATGATGATAATTCAACAAATTGCTGCCTTTCAAAAGTTCAACGTTTG
TGCTTTTCATTTGTTCAATATTGTCTTGACGATCGTTTTAAAAAAGTTATCGGTGCACAT
TATCCTACTACATATGATCAATTTGAAATAACGGATGAAGATGCAGAATGGGAACAAGAA
TCAAAATATAGTAACTCATCTCTTCGTTTAACTGAAAGTTTCCGTGCGCTTTCAGTTCAT
CATTGTTCTTCTAAATTATCACGAACTCATTCCAATTTTACCTATACAACACAATCACTC
GATAACACTGTTTCGGCATCTACCATGAATTCTTTAAAAACAATTCCTTCATTTCAACGC
ATGCGTAAATTTAAAGTTCAATTACCAGAAAATGTTAAAGAAAGTAAGTTGTCAGTACTA
TCATCTGAAAATGATCTCAAATCAAATTCATCTTTTCGTCGTCGCATTTGCAAATTCAAT
TCAAACATAAGTTTTACAAAACCATCTAATAACGGTGTATTTGAAGAAGAGGAAGAAGAA
GAGAATAGTACAATGGATCGAACTTCTTTGGGCGATCGAACACCATGGATTGATCGTTTA
GCTAATGCTCCAACTGATATCTAA
>g9650.t1 Gene=g9650 Length=647
MADTAAKTKAAPAAKKEKKPAAEAAPAKPKAKAPAEPKAVTPRPFKRYGRLWAKAVFTGF
KRGLRNQHENHALLKIEGSRSRKTSLFYVGKRCVFVYKGKSKKSSPTNPKHKSRLRAIWG
KVTRLHGNNGSVRARFKTNLPAYKEKIEQKMPKSNGFCNFMFSLKKQLGQEISINELQLI
AGEKWKNLSEEERATYKGNKTEPVTQKKYNCVGTLVESQSRLLNQKRINDEKITMYIEQM
IQKAIEKETNGLFSQVFYFFSASYFARKRNEDIFPAEIALAKFSLKAGIIDKMHMMINPG
ELPLGYPGEALFHAKRTHRLDLPPNIPGEKSYKKILDAIIEFVGAERFTSEHIPPFFTYE
EMEDDDFLAAEMTLDKIATENDQYNAFRVYKADTLFFILHKHVIENRNFFYGSNDKSFAS
VVTAWDMLRRDDFRYSLIGCDKHNDDDNSTNCCLSKVQRLCFSFVQYCLDDRFKKVIGAH
YPTTYDQFEITDEDAEWEQESKYSNSSLRLTESFRALSVHHCSSKLSRTHSNFTYTTQSL
DNTVSASTMNSLKTIPSFQRMRKFKVQLPENVKESKLSVLSSENDLKSNSSFRRRICKFN
SNISFTKPSNNGVFEEEEEEENSTMDRTSLGDRTPWIDRLANAPTDI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9650.t1 | Gene3D | G3DSA:2.40.10.190 | translation elongation factor selb | 48 | 152 | 4.8E-37 |
| 4 | g9650.t1 | Hamap | MF_00573 | 50S ribosomal protein L35Ae [rpl35ae]. | 53 | 152 | 20.172295 |
| 8 | g9650.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - |
| 10 | g9650.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - |
| 9 | g9650.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 635 | - |
| 3 | g9650.t1 | PANTHER | PTHR21358 | PROTEIN MAELSTROM HOMOLOG | 152 | 550 | 4.8E-45 |
| 2 | g9650.t1 | Pfam | PF01247 | Ribosomal protein L35Ae | 51 | 143 | 1.4E-32 |
| 1 | g9650.t1 | Pfam | PF13017 | piRNA pathway germ-plasm component | 271 | 486 | 6.0E-40 |
| 7 | g9650.t1 | ProSitePatterns | PS01105 | Ribosomal protein L35Ae signature. | 120 | 141 | - |
| 6 | g9650.t1 | SUPERFAMILY | SSF50447 | Translation proteins | 51 | 142 | 1.88E-26 |
| 5 | g9650.t1 | SUPERFAMILY | SSF47095 | HMG-box | 151 | 197 | 2.23E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0060964 | regulation of gene silencing by miRNA | BP |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
