General information for g9650.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein maelstrom-like protein.
Parent gene
- The parent gene g9650 is located on chr_1: 4479451..4481309 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9650 | g9650.t18 | TSS | g9650.t18 | 4478710 | 4478710 |
| chr_1 | g9650 | g9650.t18 | isoform | g9650.t18 | 4479451 | 4481309 |
| chr_1 | g9650 | g9650.t18 | exon | g9650.t18.exon1 | 4479451 | 4479608 |
| chr_1 | g9650 | g9650.t18 | exon | g9650.t18.exon2 | 4479676 | 4480153 |
| chr_1 | g9650 | g9650.t18 | cds | g9650.t18.CDS1 | 4479691 | 4480153 |
| chr_1 | g9650 | g9650.t18 | exon | g9650.t18.exon3 | 4480214 | 4480427 |
| chr_1 | g9650 | g9650.t18 | cds | g9650.t18.CDS2 | 4480214 | 4480427 |
| chr_1 | g9650 | g9650.t18 | exon | g9650.t18.exon4 | 4480489 | 4481309 |
| chr_1 | g9650 | g9650.t18 | cds | g9650.t18.CDS3 | 4480489 | 4480492 |
| chr_1 | g9650 | g9650.t18 | TTS | g9650.t18 | NA | NA |
Sequences
>g9650.t18 Gene=g9650 Length=1671
ATTGTTCAGGATAAAAGTTCAAAATTTCAGGTTCAAAAAAAAAGTTCAAAAAATTTTGTC
CACGCTTAAATTTGCTCTGCTCTGAAAATTGTGTAAAAATTAGTTTTAGGAATATAAAAG
TGTCGTATAATACTTTAAATTAATTAGCATATAAGGAAAAAATAGAACAAAAAATGCCAA
AATCAAATGGATTTTGTAATTTTATGTTTTCTCTGAAGAAGCAGTTAGGACAAGAGATTT
CAATAAACGAATTACAATTGATCGCTGGTGAAAAATGGAAGAATTTGAGTGAAGAGGAAA
GAGCAACATATAAAGGAAATAAAACAGAACCAGTAACGCAGAAGAAATATAATTGCGTTG
GAACACTTGTTGAGAGTCAAAGTCGTTTATTAAATCAAAAACGTATCAATGATGAGAAAA
TAACAATGTACATTGAACAAATGATACAAAAAGCGATCGAAAAAGAAACAAATGGATTAT
TTTCTCAAGTCTTTTACTTTTTTTCTGCATCATACTTTGCAAGAAAACGAAATGAAGACA
TCTTTCCAGCTGAAATAGCTCTTGCAAAATTCTCACTAAAAGCCGGTATAATCGATAAAA
TGCATATGATGATCAATCCTGGTGAATTACCTTTAGGATATCCTGGAGAAGCTCTATTTC
ATGCTAAACGAACTCATCGACTTGATCTTCCACCAAATATTCCTGGTGAAAAAAGCTATA
AAAAAATTCTGGATGCAATAATTGAATTTGTCGGAGCAGAGCGATTTACTTCAGAACATA
TTCCACCGTTTTTTACTTATGAAGAAATGGAAGATGATGATTTCTTAGCAGCTGAAATGA
CTTTAGGTTTATAAAATTGCAACTGAGAATGACCAATATAATGCATTTCGAGTATATAAA
GCTGATACATTGTTTTTCATTCTACACAAGCATGTGATTGAAAATCGAAACTTTTTTTAT
GGTTCAAATGATAAATCATTTGCCTCTGTTGTTACTGCTTGGGATATGCTGCGACGTGAT
GATTTTCGATATAGTTTAATTGGATGCGATAAACATAATGATGATGATAATTCAACAAAT
TGCTGCCTTTCAAAAGTTCAACGTTTGTGCTTTTCATTTGTTCAATATTGTCTTGACGAT
CGTTTTAAAAAAGTTATCGGTGCACATTATCCTACTACATATGATCAATTTGAAATAACG
GATGAAGATGCAGAATGGGAACAAGAATCAAAATATAGTAACTCATCTCTTCGTTTAACT
GAAAGTTTCCGTGCGCTTTCAGTTCATCATTGTTCTTCTAAATTATCACGAACTCATTCC
AATTTTACCTATACAACACAATCACTCGATAACACTGTTTCGGCATCTACCATGAATTCT
TTAAAAACAATTCCTTCATTTCAACGCATGCGTAAATTTAAAGTTCAATTACCAGAAAAT
GTTAAAGAAAGTAAGTTGTCAGTACTATCATCTGAAAATGATCTCAAATCAAATTCATCT
TTTCGTCGTCGCATTTGCAAATTCAATTCAAACATAAGTTTTACAAAACCATCTAATAAC
GGTGTATTTGAAGAAGAGGAAGAAGAAGAGAATAGTACAATGGATCGAACTTCTTTGGGC
GATCGAACACCATGGATTGATCGTTTAGCTAATGCTCCAACTGATATCTAA
>g9650.t18 Gene=g9650 Length=226
MPKSNGFCNFMFSLKKQLGQEISINELQLIAGEKWKNLSEEERATYKGNKTEPVTQKKYN
CVGTLVESQSRLLNQKRINDEKITMYIEQMIQKAIEKETNGLFSQVFYFFSASYFARKRN
EDIFPAEIALAKFSLKAGIIDKMHMMINPGELPLGYPGEALFHAKRTHRLDLPPNIPGEK
SYKKILDAIIEFVGAERFTSEHIPPFFTYEEMEDDDFLAAEMTLGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9650.t18 | CDD | cd00084 | HMG-box | 7 | 47 | 0.0007076 |
| 4 | g9650.t18 | Gene3D | G3DSA:1.10.30.10 | DNA Binding (I) | 7 | 51 | 0.0000220 |
| 2 | g9650.t18 | PANTHER | PTHR21358 | PROTEIN MAELSTROM HOMOLOG | 2 | 211 | 0.0000000 |
| 1 | g9650.t18 | Pfam | PF13017 | piRNA pathway germ-plasm component | 121 | 211 | 0.0000000 |
| 3 | g9650.t18 | SUPERFAMILY | SSF47095 | HMG-box | 3 | 47 | 0.0000013 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0060964 | regulation of gene silencing by miRNA | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
