Gene loci information

Transcript annotation

  • This transcript has been annotated as DnaJ homolog subfamily C member 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9651 g9651.t1 TTS g9651.t1 4481378 4481378
chr_1 g9651 g9651.t1 isoform g9651.t1 4481644 4483585
chr_1 g9651 g9651.t1 exon g9651.t1.exon1 4481644 4483061
chr_1 g9651 g9651.t1 cds g9651.t1.CDS1 4481644 4483061
chr_1 g9651 g9651.t1 exon g9651.t1.exon2 4483507 4483585
chr_1 g9651 g9651.t1 cds g9651.t1.CDS2 4483507 4483585
chr_1 g9651 g9651.t1 TSS g9651.t1 4483664 4483664

Sequences

>g9651.t1 Gene=g9651 Length=1497
ATGGAACTAATAAGTTCTGTTGGTAGTCAGAATTCATTCACATTTTTAATTTTCCTCTTT
ATAGAATTAATTTCAAAAGGTGTTGAATCAACATCTGAGGTCGAGAGACATTTAGAAATG
GGAAGAGACTTTTTGGCAAGAGGTCAATTAGGGGATGCACTTTCTCATTATCATGCAGCT
GTTGATGGAGACAATAGAAATTATCTCACATATTTCAAACGTGCCACTGTATATTTGGCA
CTTGGAAAAGCTAAACTTGCGATTGGTGATCTTGATCGTGCACTCGAATTAAAGCCTGAT
TTTACTACAGCAAGACAACAGCGTGGATCTGTTTATTTGAAAATGGGTGACTATTATAAT
GCTGAAAGAGATTTATATGATGTTTTACAAGAGGATCCAATGAATGAAGAATCTCGTTAT
CTGTTTGATCGAATCACACCTGCACGACAGCAAATTGATTTAGTTCATGATGTCATTACA
CAAGGCGATCATCAATCAGCAGTTGCGCTTTTAACACAACTTTTGGAAATATCACCTTGG
AGTCCGGAACTTCGAGAGTTAAGAGCACAATCAAATTTAGCAATAGGTGATCGGCTTGCT
GCAGTATCAGATTTTAGATCAGTAAATAGATTAATGCAAGATGGTTCAGATGATTTAACA
ACGCACATATTTAAATTAGCGGAGCTACTTTATAATCTTGGACATGCAGCTGATGCACTT
AAAGAAATTCGTGAGTGCTTAAAACTTGATCCAGAACATAAATTATGCTTCCCATTTTAC
AAAAGAGTGAAGAAAATTGACAAGTTCCTTAATGACGCTGAGACTCATCGCGAGAATAAA
AATTATCAAGGTTGCATATCATCTGCCGAAAAGATTAAGAAAAATGAAAAAGATGTGCAA
ATGATTATATTTAGCGCCAATCAATACCTCTGTAGTTGTAGTGTTAAGAATGATAAATAT
ACTGATGCCTTGACGTACTGTAATGAAGCTTTAAAAATTGAAAAAGATCCCAATATTCTC
TGTGATCTTGCCGAAGCCCTCATTGGCGAAGAAATGTATGATGATGCCATAAGAAGTTAT
CAAGATGCACTCGATTTTGATGAAAATTCACAGAGAGCAAAAGAGGGAATTGAGAGAGCC
AAAAGACTGCAAAAGCAAGCCGAAAAACGAGATTATTATAAAATCCTCGGTGTGTCAAGA
TCAGCAACAACTAAAGAAATTACAAAAGCATATAGAAAGATGGCTCAAAAATGGCATCCT
GATAATTTTGCATCAAATGAGAGTGAAAGAAAAATTGCAGAAAAGAAATTTATTGATATA
GCAGCTGCTAAAGAAGTTCTCACAGATCCTGAAAAGAGAGCACAGTTTGATAATGGTGAA
GATCCACTAGATCCCGAAGCAAAATCACAAGGCTTTAGAGGGGGAAATCCTTTTGCTAAT
TTTCATCAGTTTCATCAAGGCGGTAGTCCTTTTCAATTTAAATTTCATTTCTCATAA

>g9651.t1 Gene=g9651 Length=498
MELISSVGSQNSFTFLIFLFIELISKGVESTSEVERHLEMGRDFLARGQLGDALSHYHAA
VDGDNRNYLTYFKRATVYLALGKAKLAIGDLDRALELKPDFTTARQQRGSVYLKMGDYYN
AERDLYDVLQEDPMNEESRYLFDRITPARQQIDLVHDVITQGDHQSAVALLTQLLEISPW
SPELRELRAQSNLAIGDRLAAVSDFRSVNRLMQDGSDDLTTHIFKLAELLYNLGHAADAL
KEIRECLKLDPEHKLCFPFYKRVKKIDKFLNDAETHRENKNYQGCISSAEKIKKNEKDVQ
MIIFSANQYLCSCSVKNDKYTDALTYCNEALKIEKDPNILCDLAEALIGEEMYDDAIRSY
QDALDFDENSQRAKEGIERAKRLQKQAEKRDYYKILGVSRSATTKEITKAYRKMAQKWHP
DNFASNESERKIAEKKFIDIAAAKEVLTDPEKRAQFDNGEDPLDPEAKSQGFRGGNPFAN
FHQFHQGGSPFQFKFHFS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g9651.t1 CDD cd06257 DnaJ 391 449 1.21166E-17
14 g9651.t1 Coils Coil Coil 370 390 -
12 g9651.t1 Gene3D G3DSA:1.25.40.10 - 32 388 1.7E-92
13 g9651.t1 Gene3D G3DSA:1.10.287.110 - 389 496 9.9E-27
4 g9651.t1 PANTHER PTHR44140:SF1 DNAJ (HSP40) HOMOLOG, SUBFAMILY C, MEMBER 3B 30 497 3.2E-144
5 g9651.t1 PANTHER PTHR44140 LD25575P 30 497 3.2E-144
7 g9651.t1 PRINTS PR00625 DnaJ domain signature 393 411 2.4E-15
8 g9651.t1 PRINTS PR00625 DnaJ domain signature 411 426 2.4E-15
6 g9651.t1 PRINTS PR00625 DnaJ domain signature 432 452 2.4E-15
1 g9651.t1 Pfam PF13432 Tetratricopeptide repeat 38 100 1.7E-4
3 g9651.t1 Pfam PF13181 Tetratricopeptide repeat 224 253 0.03
2 g9651.t1 Pfam PF00226 DnaJ domain 391 457 2.2E-22
23 g9651.t1 ProSiteProfiles PS50005 TPR repeat profile. 34 67 7.08
30 g9651.t1 ProSiteProfiles PS50293 TPR repeat region circular profile. 34 253 26.137
26 g9651.t1 ProSiteProfiles PS50005 TPR repeat profile. 68 101 9.381
28 g9651.t1 ProSiteProfiles PS50005 TPR repeat profile. 102 135 9.116
27 g9651.t1 ProSiteProfiles PS50005 TPR repeat profile. 148 181 5.576
24 g9651.t1 ProSiteProfiles PS50005 TPR repeat profile. 220 253 8.408
25 g9651.t1 ProSiteProfiles PS50005 TPR repeat profile. 337 370 8.526
29 g9651.t1 ProSiteProfiles PS50293 TPR repeat region circular profile. 337 370 8.957
22 g9651.t1 ProSiteProfiles PS50076 dnaJ domain profile. 391 460 19.368
16 g9651.t1 SMART SM00028 tpr_5 34 67 92.0
19 g9651.t1 SMART SM00028 tpr_5 68 101 0.0019
20 g9651.t1 SMART SM00028 tpr_5 102 135 0.13
17 g9651.t1 SMART SM00028 tpr_5 220 253 16.0
18 g9651.t1 SMART SM00028 tpr_5 337 370 0.022
21 g9651.t1 SMART SM00271 dnaj_3 390 452 1.6E-25
9 g9651.t1 SUPERFAMILY SSF48452 TPR-like 38 370 3.59E-27
10 g9651.t1 SUPERFAMILY SSF46565 Chaperone J-domain 385 496 1.83E-27
11 g9651.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 30 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values