Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DnaJ homolog subfamily C member 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9651 g9651.t5 TTS g9651.t5 4481378 4481378
chr_1 g9651 g9651.t5 isoform g9651.t5 4482087 4483585
chr_1 g9651 g9651.t5 exon g9651.t5.exon1 4482087 4482348
chr_1 g9651 g9651.t5 cds g9651.t5.CDS1 4482237 4482348
chr_1 g9651 g9651.t5 exon g9651.t5.exon2 4482461 4483061
chr_1 g9651 g9651.t5 cds g9651.t5.CDS2 4482461 4483061
chr_1 g9651 g9651.t5 exon g9651.t5.exon3 4483507 4483585
chr_1 g9651 g9651.t5 cds g9651.t5.CDS3 4483507 4483585
chr_1 g9651 g9651.t5 TSS g9651.t5 4483664 4483664

Sequences

>g9651.t5 Gene=g9651 Length=942
ATGGAACTAATAAGTTCTGTTGGTAGTCAGAATTCATTCACATTTTTAATTTTCCTCTTT
ATAGAATTAATTTCAAAAGGTGTTGAATCAACATCTGAGGTCGAGAGACATTTAGAAATG
GGAAGAGACTTTTTGGCAAGAGGTCAATTAGGGGATGCACTTTCTCATTATCATGCAGCT
GTTGATGGAGACAATAGAAATTATCTCACATATTTCAAACGTGCCACTGTATATTTGGCA
CTTGGAAAAGCTAAACTTGCGATTGGTGATCTTGATCGTGCACTCGAATTAAAGCCTGAT
TTTACTACAGCAAGACAACAGCGTGGATCTGTTTATTTGAAAATGGGTGACTATTATAAT
GCTGAAAGAGATTTATATGATGTTTTACAAGAGGATCCAATGAATGAAGAATCTCGTTAT
CTGTTTGATCGAATCACACCTGCACGACAGCAAATTGATTTAGTTCATGATGTCATTACA
CAAGGCGATCATCAATCAGCAGTTGCGCTTTTAACACAACTTTTGGAAATATCACCTTGG
AGTCCGGAACTTCGAGAGTTAAGAGCACAATCAAATTTAGCAATAGGTGATCGGCTTGCT
GCAGTATCAGATTTTAGATCAGTAAATAGATTAATGCAAGATGGTTCAGATGATTTAACA
ACGCACATATTTAAATTAGCAAAATTGACAAGTTCCTTAATGACGCTGAGACTCATCGCG
AGAATAAAAATTATCAAGGTTGCATATCATCTGCCGAAAAGATTAAGAAAAATGAAAAAG
ATGTGCAAATGATTATATTTAGCGCCAATCAATACCTCTGTAGTTGTAGTGTTAAGAATG
ATAAATATACTGATGCCTTGACGTACTGTAATGAAGCTTTAAAAATTGAAAAAGATCCCA
ATATTCTCTGTGATCTTGCCGAAGCCCTCATTGGCGAAGAAA

>g9651.t5 Gene=g9651 Length=263
MELISSVGSQNSFTFLIFLFIELISKGVESTSEVERHLEMGRDFLARGQLGDALSHYHAA
VDGDNRNYLTYFKRATVYLALGKAKLAIGDLDRALELKPDFTTARQQRGSVYLKMGDYYN
AERDLYDVLQEDPMNEESRYLFDRITPARQQIDLVHDVITQGDHQSAVALLTQLLEISPW
SPELRELRAQSNLAIGDRLAAVSDFRSVNRLMQDGSDDLTTHIFKLAKLTSSLMTLRLIA
RIKIIKVAYHLPKRLRKMKKMCK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g9651.t5 Gene3D G3DSA:1.25.40.10 - 32 262 5.9E-50
3 g9651.t5 PANTHER PTHR44140:SF1 DNAJ (HSP40) HOMOLOG, SUBFAMILY C, MEMBER 3B 27 233 3.4E-55
4 g9651.t5 PANTHER PTHR44140 LD25575P 27 233 3.4E-55
1 g9651.t5 Pfam PF13432 Tetratricopeptide repeat 38 100 6.2E-5
2 g9651.t5 Pfam PF13181 Tetratricopeptide repeat 104 133 0.13
12 g9651.t5 ProSiteProfiles PS50005 TPR repeat profile. 34 67 7.08
16 g9651.t5 ProSiteProfiles PS50293 TPR repeat region circular profile. 34 135 22.229
13 g9651.t5 ProSiteProfiles PS50005 TPR repeat profile. 68 101 9.381
15 g9651.t5 ProSiteProfiles PS50005 TPR repeat profile. 102 135 9.116
14 g9651.t5 ProSiteProfiles PS50005 TPR repeat profile. 148 181 5.576
7 g9651.t5 SMART SM00028 tpr_5 34 67 92.0
8 g9651.t5 SMART SM00028 tpr_5 68 101 0.0019
9 g9651.t5 SMART SM00028 tpr_5 102 135 0.13
6 g9651.t5 SUPERFAMILY SSF48452 TPR-like 33 145 1.6E-22
5 g9651.t5 SUPERFAMILY SSF48452 TPR-like 158 214 1.84E-6
10 g9651.t5 SignalP_EUK SignalP-noTM SignalP-noTM 1 30 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed