General information for g9652.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as HBS1-like protein.
Parent gene
- The parent gene g9652 is located on chr_1: 4486738..4487053 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9652 | g9652.t7 | isoform | g9652.t7 | 4485930 | 4487053 |
| chr_1 | g9652 | g9652.t7 | exon | g9652.t7.exon1 | 4485930 | 4486373 |
| chr_1 | g9652 | g9652.t7 | cds | g9652.t7.CDS1 | 4486013 | 4486373 |
| chr_1 | g9652 | g9652.t7 | exon | g9652.t7.exon2 | 4486431 | 4487053 |
| chr_1 | g9652 | g9652.t7 | cds | g9652.t7.CDS2 | 4486431 | 4487053 |
| chr_1 | g9652 | g9652.t7 | TTS | g9652.t7 | 4487132 | 4487132 |
| chr_1 | g9652 | g9652.t7 | TSS | g9652.t7 | NA | NA |
Sequences
>g9652.t7 Gene=g9652 Length=1067
CCTGGACATAAAGGTTTCTATTACAATCATTTTTAAAAATGAATTTCATAAAAAAATAAA
ATTATTTAGATTTCATACCTAACATGATTTGTGGTGCAAATCAGGCTGATGTCGCAATAC
TCGTTGTTGATGCTACTCGTGGTGAATTTGAAGCAGGTTTTGAGCAAGGAGGTCAAACAA
GAGAGCATGCTTTACTTGTACGATCACTTGGTGTTAGTCAATTGTGTGTGGCTGTAAATA
AATTAGACAACGAAAATTGGAGCCAAGAACGTTTCAATGACATCATGACAAAACTCAAAC
AATTTTTGAAACAAGCAGGATTCAAAGATTCCGAAGTTCATTATATACCTTGTTCAGGTC
TTACAGGTGAAAACTTAGTTAAGCCTTCGACTGAGCCCGCACTTAAAAGTTGGTATAATG
GAAAAACATTATTAGAAGTTGTTGATTCCTTTAAAGTTCCTGAAAGAGCAATAGACAAGC
CATTCCGAATGTCTATTTCGGATGTTTTCAAAGGTGTTGGAAGTGCTGGTTTTTGTATTT
CGGGAAGAATTGCATCAGGCCATGTCTGTGTGAATGATAAAGTTCTCATGTGTCCAAGTA
GAGAACAATGTGTTGTCAAATACATCACTATAGATGATGTTCAAGTTCAAACAGCATTTG
CTGGTGATCAAGTTGCAATTACAATTACAGGCATTGATCCTTCAAATGTATCCGTTGGTT
TTATATTATGCGACACACTTAATCCCGTTCCACTAGAAACAAAAATAAAAGCAAGAATAA
TTGTATTTAATGTCAAAACTCCAATAACTATAGGCTATCCTGTTTTATTACATCATCATT
CGCTCGTAGAGCCAGCTATTATTTCAAAGCTAAAAGCACAACTACACAAGGGTACAGGAG
AAGTAATCAAAAAGAATCCTCGATGTTTAACTAATAACTCATGTGCACTAATTGAATTAA
GTTTTCAACGTGCAATTGCAATTGAAAAATATTCAGAATTAAAGGAAATGGGAAGAATAA
TGTTACGAGTTGGCGGAACAACGATTGCTGCTGGATTAGTTTTTTAA
>g9652.t7 Gene=g9652 Length=327
MICGANQADVAILVVDATRGEFEAGFEQGGQTREHALLVRSLGVSQLCVAVNKLDNENWS
QERFNDIMTKLKQFLKQAGFKDSEVHYIPCSGLTGENLVKPSTEPALKSWYNGKTLLEVV
DSFKVPERAIDKPFRMSISDVFKGVGSAGFCISGRIASGHVCVNDKVLMCPSREQCVVKY
ITIDDVQVQTAFAGDQVAITITGIDPSNVSVGFILCDTLNPVPLETKIKARIIVFNVKTP
ITIGYPVLLHHHSLVEPAIISKLKAQLHKGTGEVIKKNPRCLTNNSCALIELSFQRAIAI
EKYSELKEMGRIMLRVGGTTIAAGLVF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g9652.t7 | CDD | cd16267 | HBS1-like_II | 133 | 217 | 0.000 |
| 13 | g9652.t7 | CDD | cd04093 | HBS1_C_III | 221 | 326 | 0.000 |
| 8 | g9652.t7 | Gene3D | G3DSA:3.40.50.300 | - | 10 | 125 | 0.000 |
| 10 | g9652.t7 | Gene3D | G3DSA:2.40.30.10 | Translation factors | 126 | 218 | 0.000 |
| 9 | g9652.t7 | Gene3D | G3DSA:2.40.30.10 | Translation factors | 221 | 327 | 0.000 |
| 3 | g9652.t7 | PANTHER | PTHR23115:SF188 | HBS1-LIKE PROTEIN | 1 | 326 | 0.000 |
| 4 | g9652.t7 | PANTHER | PTHR23115 | TRANSLATION FACTOR | 1 | 326 | 0.000 |
| 2 | g9652.t7 | Pfam | PF00009 | Elongation factor Tu GTP binding domain | 1 | 122 | 0.000 |
| 1 | g9652.t7 | Pfam | PF03143 | Elongation factor Tu C-terminal domain | 225 | 326 | 0.000 |
| 11 | g9652.t7 | ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 1 | 127 | 25.336 |
| 6 | g9652.t7 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 143 | 0.000 |
| 7 | g9652.t7 | SUPERFAMILY | SSF50447 | Translation proteins | 125 | 221 | 0.000 |
| 5 | g9652.t7 | SUPERFAMILY | SSF50465 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 227 | 326 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
