General information for g9683.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Calcium/calmodulin-dependent protein kinase type II alpha chain.
Parent gene
- The parent gene g9683 is located on chr_1: 4608573..4609242 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9683 | g9683.t1 | isoform | g9683.t1 | 4608573 | 4609242 |
| chr_1 | g9683 | g9683.t1 | exon | g9683.t1.exon1 | 4608573 | 4608855 |
| chr_1 | g9683 | g9683.t1 | cds | g9683.t1.CDS1 | 4608573 | 4608855 |
| chr_1 | g9683 | g9683.t1 | exon | g9683.t1.exon2 | 4608916 | 4609125 |
| chr_1 | g9683 | g9683.t1 | cds | g9683.t1.CDS2 | 4608916 | 4609125 |
| chr_1 | g9683 | g9683.t1 | exon | g9683.t1.exon3 | 4609181 | 4609242 |
| chr_1 | g9683 | g9683.t1 | cds | g9683.t1.CDS3 | 4609181 | 4609242 |
| chr_1 | g9683 | g9683.t1 | TSS | g9683.t1 | NA | NA |
| chr_1 | g9683 | g9683.t1 | TTS | g9683.t1 | NA | NA |
Sequences
>g9683.t1 Gene=g9683 Length=555
ATGGCTATGCCAGTCTGTACACGCTTCTCCGATAATTATGATATAAAAGAGGAGTTAGGA
AAAGGAGCATTTTCCATAGTTAAGCGATGTGTTCAGAAATCAACTGGACTTGAATTTGCT
GCAAAAATCATCAATACTAAAAAGTTAACAGCAAGAGATTTTCAAAAATTGAAACGTGAA
GCGCGTGTTTGTCGTAAATTGCAACATCCAAATATTGTGAGACTGCATGACAGCATAAAT
GAAGCAGATTATCATTATCTTATTTTTGATCTTGTAACTGGTGGTGAATTATTTGAGGAT
ATTGTGGCACGTGAATTTTATTCAGAAGCAGATGCGTCACATTGTATTCAACAGATACTT
GAGTCAGTTCATCACTGTCATCAAAATGGTATCGTGCATAGGGATTTGAAACCTGAAAAT
TTACTTCTAGCTAGTAAGATGAAGGGTGCTGCAGTAAAGTTGGCCGATTTTGGACTTGCC
ATTGAAGTACAGGGTGATCAACAAGCTTGGTTTGGTTTTGCAGGCACACCAGGCTACTTG
TCACCCGAAGTTTAA
>g9683.t1 Gene=g9683 Length=184
MAMPVCTRFSDNYDIKEELGKGAFSIVKRCVQKSTGLEFAAKIINTKKLTARDFQKLKRE
ARVCRKLQHPNIVRLHDSINEADYHYLIFDLVTGGELFEDIVAREFYSEADASHCIQQIL
ESVHHCHQNGIVHRDLKPENLLLASKMKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYL
SPEV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9683.t1 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 93 | 1.2E-36 |
| 9 | g9683.t1 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 94 | 184 | 4.6E-30 |
| 2 | g9683.t1 | PANTHER | PTHR24347 | SERINE/THREONINE-PROTEIN KINASE | 5 | 184 | 6.3E-113 |
| 3 | g9683.t1 | PANTHER | PTHR24347:SF417 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE (CAM KINASE) II GAMMA 1 | 5 | 184 | 6.3E-113 |
| 1 | g9683.t1 | Pfam | PF00069 | Protein kinase domain | 13 | 184 | 2.5E-48 |
| 7 | g9683.t1 | ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 19 | 42 | - |
| 6 | g9683.t1 | ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 131 | 143 | - |
| 10 | g9683.t1 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 184 | 37.078 |
| 5 | g9683.t1 | SMART | SM00220 | serkin_6 | 13 | 184 | 8.4E-28 |
| 4 | g9683.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 10 | 184 | 2.97E-57 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed