General information for g9716.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9716 is located on chr_1: 4783787..4784987 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9716 | g9716.t6 | isoform | g9716.t6 | 4782671 | 4784987 |
| chr_1 | g9716 | g9716.t6 | exon | g9716.t6.exon1 | 4782671 | 4782813 |
| chr_1 | g9716 | g9716.t6 | cds | g9716.t6.CDS1 | 4782771 | 4782813 |
| chr_1 | g9716 | g9716.t6 | exon | g9716.t6.exon2 | 4782887 | 4783071 |
| chr_1 | g9716 | g9716.t6 | cds | g9716.t6.CDS2 | 4782887 | 4783071 |
| chr_1 | g9716 | g9716.t6 | exon | g9716.t6.exon3 | 4783549 | 4783630 |
| chr_1 | g9716 | g9716.t6 | cds | g9716.t6.CDS3 | 4783549 | 4783630 |
| chr_1 | g9716 | g9716.t6 | exon | g9716.t6.exon4 | 4783698 | 4784987 |
| chr_1 | g9716 | g9716.t6 | cds | g9716.t6.CDS4 | 4783698 | 4783708 |
| chr_1 | g9716 | g9716.t6 | TSS | g9716.t6 | NA | NA |
| chr_1 | g9716 | g9716.t6 | TTS | g9716.t6 | NA | NA |
Sequences
>g9716.t6 Gene=g9716 Length=1700
AGATGGTGTACTCGCTGTTCATGAATTTCACGTTTGGCAGTTGGCTGGAGATAGAATTAT
TGCTTCAGCTCACATTCGTTGTCGTAATTTAAGCGAATACATGAAATTAGCAGAGAAAGT
GAAAGAATTTTTCCATAATGAGGGTATTCACAGTACGACGATTCAGCCAGAATTTATTGA
AATAGAAAATATGAATAGCTGTTCAGCATCAGATGGAATTTCGACAAGCTTGAATATAAG
TGGAAAAGAGGAAGGTTGTGTTCTAGATTGTCCAAATATTGATGAGAATTGTGTCAAAGC
AACTTGCTGCCAAAATACAAACAATAAGACTCATAGTCCAGCCGCTTCTCCATTTTTATG
TCGTCAGCGACCAATAATGCGCGGCACAGAAAATGAAAACGGAGAAAAAGTTGCTCGATA
ACGCACAAAGTATTCCAATCGTAATGTCTTCATCAAATCAAACAGCTGTGGAGAACAACA
GTAATAAGATTCTCGTTTGACCAATTCCATTTAATAGTGTAAAAAGTAAAAAGATTAAAA
TGAATTTATGCAAAAAAAATATGACATCATCATCATCAGATTCATTTAATTTATCAACAA
TTGAAAATTCGATGACGGCAAGAACGATAGTGGAGGTTGGCTGTGATACAATGGGATTTG
AAAATTCAAATAAACAATTTCATCGTATGACGATTTCAACATTATCTCTTTAGACAAATT
ATTATAAAATGAATATTTAATGATAATCTGAGTTTTTTATGTGTATCACTTGCAAGCAAC
ATAAGAAAGTAAAAAATACTTAACTTTATGTTCTTTTTTATAACAAACTTATTTAATGAT
TTCAATTGATTGAAAAAGAGATAAATATCCCATTTTTAAATCAGCATAGTTTTAAGTTTA
GATAAAACGAAAAATATCTATAATATAATAGAAATGGAAAACTATCCTACTATTCATTAA
AATACATTTAGTAGTAATTTAATTTTTTTTATCTTTTATAATACGATTTATATAGCAAAA
ACAAGAAAGAAATCAAGACTTTATTGTCAAATCTCATGAATGAATGTCTTTTGGAAAAAG
TGAAAATAAACTTTTTTAAATTGATTTTTTCGCCAAAGATTTTTCCACACCGAAGAACTT
TTTTATCTTTTAACATTTAATAAAAAAATCGAGTGGCATAGTTCAAGAAAGAGACAAAAT
TCATACATATAATAAAAAAAGCTGCCACTGTGGAAGTTTAGATATGAAAAATACATTCTT
GTTTCCACTTTGAAATAAAATCTTTTATAAAGACGAAGATGTAGACATTTTTTGATAATA
ATAAAATTTAAAGCGATAGCGTACCTACTATATAGCAACTAAAAAACCACATGCCCTATA
TGAAAGTTTAATAAAAGCGCTATTCATTCAATGAATTATATATAGAAAGTTTCAATCAAT
GTGGATGCATTTTAAATTATCTTGAGAAAAGAGAGGGAGAAAAAATAAAAATTAATGTGT
TTAGGGTAATTTTAGGACAAAAAAGACTAAGAATATAAGTTTAATGATGATATAGAAGAA
AAATGAAAAAAAAAATTTTTAGGAAAACTTTTATTCCAGAGATATAGCATAATCAAAAAC
ATGTTGTTTGTTGCAATAAAGAATGAATGAAAAACGAAATAATTTAAATTAAATGTCTTT
TTATTAATATCATATTATAC
>g9716.t6 Gene=g9716 Length=106
MKLAEKVKEFFHNEGIHSTTIQPEFIEIENMNSCSASDGISTSLNISGKEEGCVLDCPNI
DENCVKATCCQNTNNKTHSPAASPFLCRQRPIMRGTENENGEKVAR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g9716.t6 | PANTHER | PTHR45820:SF2 | ZINC TRANSPORTER 63C, ISOFORM F | 1 | 95 | 0 |
| g9716.t6 | PANTHER | PTHR45820 | FI23527P1 | 1 | 95 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
