General information for g9716.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9716 is located on chr_1: 4783787..4784987 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9716 | g9716.t7 | isoform | g9716.t7 | 4782900 | 4784451 |
| chr_1 | g9716 | g9716.t7 | exon | g9716.t7.exon1 | 4782900 | 4783071 |
| chr_1 | g9716 | g9716.t7 | cds | g9716.t7.CDS1 | 4782934 | 4783071 |
| chr_1 | g9716 | g9716.t7 | exon | g9716.t7.exon2 | 4783549 | 4783630 |
| chr_1 | g9716 | g9716.t7 | cds | g9716.t7.CDS2 | 4783549 | 4783630 |
| chr_1 | g9716 | g9716.t7 | exon | g9716.t7.exon3 | 4783693 | 4784451 |
| chr_1 | g9716 | g9716.t7 | cds | g9716.t7.CDS3 | 4783693 | 4783787 |
| chr_1 | g9716 | g9716.t7 | TTS | g9716.t7 | 4784948 | 4784948 |
| chr_1 | g9716 | g9716.t7 | TSS | g9716.t7 | NA | NA |
Sequences
>g9716.t7 Gene=g9716 Length=1013
GACGATTCAGCCAGAATTTATTGAAATAGAAAATATGAATAGCTGTTCAGCATCAGATGG
AATTTCGACAAGCTTGAATATAAGTGGAAAAGAGGAAGGTTGTGTTCTAGATTGTCCAAA
TATTGATGAGAATTGTGTCAAAGCAACTTGCTGCCAAAATACAAACAATAAGACTCATAG
TCCAGCCGCTTCTCCATTTTTATGTCGTCAGCGACCAATAATGCGCGGCACAGAAAATGA
AAACGGAGAAAAAGGCTCATTGCTCGATAACGCACAAAGTATTCCAATCGTAATGTCTTC
ATCAAATCAAACAGCTGTGGAGAACAACAGTAATAAGATTCTCGTTTGACCAATTCCATT
TAATAGTGTAAAAAGTAAAAAGATTAAAATGAATTTATGCAAAAAAAATATGACATCATC
ATCATCAGATTCATTTAATTTATCAACAATTGAAAATTCGATGACGGCAAGAACGATAGT
GGAGGTTGGCTGTGATACAATGGGATTTGAAAATTCAAATAAACAATTTCATCGTATGAC
GATTTCAACATTATCTCTTTAGACAAATTATTATAAAATGAATATTTAATGATAATCTGA
GTTTTTTATGTGTATCACTTGCAAGCAACATAAGAAAGTAAAAAATACTTAACTTTATGT
TCTTTTTTATAACAAACTTATTTAATGATTTCAATTGATTGAAAAAGAGATAAATATCCC
ATTTTTAAATCAGCATAGTTTTAAGTTTAGATAAAACGAAAAATATCTATAATATAATAG
AAATGGAAAACTATCCTACTATTCATTAAAATACATTTAGTAGTAATTTAATTTTTTTTA
TCTTTTATAATACGATTTATATAGCAAAAACAAGAAAGAAATCAAGACTTTATTGTCAAA
TCTCATGAATGAATGTCTTTTGGAAAAAGTGAAAATAAACTTTTTTAAATTGATTTTTTC
GCCAAAGATTTTTCCACACCGAAGAACTTTTTTATCTTTTAACATTTAATAAA
>g9716.t7 Gene=g9716 Length=104
MNSCSASDGISTSLNISGKEEGCVLDCPNIDENCVKATCCQNTNNKTHSPAASPFLCRQR
PIMRGTENENGEKGSLLDNAQSIPIVMSSSNQTAVENNSNKILV
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
