General information for g9717.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9717 is located on chr_1: 4784987..4786082 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9717 | g9717.t3 | TTS | g9717.t3 | 4776517 | 4776517 |
| chr_1 | g9717 | g9717.t3 | isoform | g9717.t3 | 4777041 | 4785835 |
| chr_1 | g9717 | g9717.t3 | exon | g9717.t3.exon1 | 4777041 | 4777152 |
| chr_1 | g9717 | g9717.t3 | exon | g9717.t3.exon2 | 4777301 | 4777465 |
| chr_1 | g9717 | g9717.t3 | exon | g9717.t3.exon3 | 4777686 | 4777777 |
| chr_1 | g9717 | g9717.t3 | exon | g9717.t3.exon4 | 4778031 | 4778201 |
| chr_1 | g9717 | g9717.t3 | cds | g9717.t3.CDS1 | 4778094 | 4778201 |
| chr_1 | g9717 | g9717.t3 | exon | g9717.t3.exon5 | 4785476 | 4785835 |
| chr_1 | g9717 | g9717.t3 | cds | g9717.t3.CDS2 | 4785476 | 4785835 |
| chr_1 | g9717 | g9717.t3 | TSS | g9717.t3 | 4785892 | 4785892 |
Sequences
>g9717.t3 Gene=g9717 Length=900
ATGAGTCAACCAAAAAAACCATGGAAGAAAAATTTATACGAGAACAAAGAATATGAAGAC
AACTACACAGATCCAAGTTTCTTAAAAGATTTAAGGCAAAATTACAATTTAGAAAGATAT
ACATATAAAGAATGTTTACTTGGTGTTACAAAAGTTTCGCAAGAAATATCAATAGTGACA
CTCTTTCTAATTGTCTTCTATCATCTGTATCAAAATAGTGTTCAACCACAAACTATATTA
TTCAACTCATTCACAATAACTGGAATCGGCTACCTTTTTTATATTGGCACACCAAATCTG
CAAAAAGCAAAAAATGTCATCGAGGATTCAAAAACTGTTGTAACTGTATTACTATTTGGA
ATTTTATTAATAATCAGGAATTGTGCTCCTAAAATTTCCGATGAAATTTCCATTTTAATT
GTCGGCAATGGTAACTTCAACTTGTACACCTGGTTCGATGTTAATTGATGTGATTTGACG
CACAATTTCTGATGGTGAGTGCAAATCAATGATACGCTTATGGATTCTCATTTGGAAGCG
ATCCCAGGTTTTTGAACCTTCACCGCAAGGTGTTTTACGTGTTGTGATGCGCAATGTATT
TGTTGGCATACGAATTGGTCCCTTAACGCGCAACTTTTGTTTCTTTGCGCCAGAGATCAA
GTCAGTGCAAACTTTTTCCAATGAACGAACATTGCATGCAGTCAATACAATGCGAATGCG
ATGAACTGATGATGTTTCAGCTTGTTGCTGCTTTTCAATATCTTTACCAACGGCCGCCTA
AAATGAAATCGAGTTAATCACTTGGATCAGCGCTGAACTTTGTTTTCACAAATATTTTAT
GGAGCACGAACTTTTTCGTGTGAAAAAAAAATTCAAAAAGGAAAGATTCGTGTCACTTAT
>g9717.t3 Gene=g9717 Length=155
MSQPKKPWKKNLYENKEYEDNYTDPSFLKDLRQNYNLERYTYKECLLGVTKVSQEISIVT
LFLIVFYHLYQNSVQPQTILFNSFTITGIGYLFYIGTPNLQKAKNVIEDSKTVVTVLLFG
ILLIIRNCAPKISDEISILIVGNGNFNLYTWFDVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9717.t3 | PANTHER | PTHR12982 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS C | 5 | 121 | 6.0E-25 |
| 1 | g9717.t3 | Pfam | PF06432 | Phosphatidylinositol N-acetylglucosaminyltransferase | 8 | 122 | 4.5E-26 |
| 6 | g9717.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 51 | - |
| 10 | g9717.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 52 | 70 | - |
| 7 | g9717.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 71 | 75 | - |
| 11 | g9717.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 94 | - |
| 5 | g9717.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 95 | 105 | - |
| 9 | g9717.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 106 | 125 | - |
| 8 | g9717.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 126 | 155 | - |
| 4 | g9717.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 67 | - |
| 3 | g9717.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 96 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
| GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
