Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9717 g9717.t6 TTS g9717.t6 4776517 4776517
chr_1 g9717 g9717.t6 isoform g9717.t6 4777130 4785835
chr_1 g9717 g9717.t6 exon g9717.t6.exon1 4777130 4777160
chr_1 g9717 g9717.t6 exon g9717.t6.exon2 4777311 4777465
chr_1 g9717 g9717.t6 exon g9717.t6.exon3 4777686 4777770
chr_1 g9717 g9717.t6 exon g9717.t6.exon4 4778029 4778201
chr_1 g9717 g9717.t6 cds g9717.t6.CDS1 4778094 4778201
chr_1 g9717 g9717.t6 exon g9717.t6.exon5 4785476 4785835
chr_1 g9717 g9717.t6 cds g9717.t6.CDS2 4785476 4785835
chr_1 g9717 g9717.t6 TSS g9717.t6 4785892 4785892

Sequences

>g9717.t6 Gene=g9717 Length=804
ATGAGTCAACCAAAAAAACCATGGAAGAAAAATTTATACGAGAACAAAGAATATGAAGAC
AACTACACAGATCCAAGTTTCTTAAAAGATTTAAGGCAAAATTACAATTTAGAAAGATAT
ACATATAAAGAATGTTTACTTGGTGTTACAAAAGTTTCGCAAGAAATATCAATAGTGACA
CTCTTTCTAATTGTCTTCTATCATCTGTATCAAAATAGTGTTCAACCACAAACTATATTA
TTCAACTCATTCACAATAACTGGAATCGGCTACCTTTTTTATATTGGCACACCAAATCTG
CAAAAAGCAAAAAATGTCATCGAGGATTCAAAAACTGTTGTAACTGTATTACTATTTGGA
ATTTTATTAATAATCAGGAATTGTGCTCCTAAAATTTCCGATGAAATTTCCATTTTAATT
GTCGGCAATGGTAACTTCAACTTGTACACCTGGTTCGATGTTAATTGATGTGATTTGACG
CACAATTTCTGATGGTGAGTGCAAATCAATGATACGCTTATGGATTCTCATCTCGATCCC
AGGTTTTTGAACCTTCACCGCAAGGTGTTTTACGTGTTGTGATGCGCAATGTATTTGTTG
GCATACGAATTGGTCCCTTAACGCGCAACTTTTGTTTCTTTGCGCCAGAGATCAAGTCAG
TGCAAACTTTTTCCAATGAACGAACATTGCATGCAGTCAATACAATGCGAATGCGATGAA
CTGATGATGTTTCAGCTTGTTGCTGCTTTTCAATATCTTTACCAACGGCCGCCATTTCAA
GTCGAGTTAATCACTTGGATCAGC

>g9717.t6 Gene=g9717 Length=155
MSQPKKPWKKNLYENKEYEDNYTDPSFLKDLRQNYNLERYTYKECLLGVTKVSQEISIVT
LFLIVFYHLYQNSVQPQTILFNSFTITGIGYLFYIGTPNLQKAKNVIEDSKTVVTVLLFG
ILLIIRNCAPKISDEISILIVGNGNFNLYTWFDVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9717.t6 PANTHER PTHR12982 PHOSPHATIDYLINOSITOL GLYCAN, CLASS C 5 121 6.0E-25
1 g9717.t6 Pfam PF06432 Phosphatidylinositol N-acetylglucosaminyltransferase 8 122 4.5E-26
6 g9717.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 51 -
10 g9717.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 52 70 -
7 g9717.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 71 75 -
11 g9717.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 76 94 -
5 g9717.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 95 105 -
9 g9717.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 106 125 -
8 g9717.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 126 155 -
4 g9717.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 45 67 -
3 g9717.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 77 96 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006506 GPI anchor biosynthetic process BP
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed