General information for g9718.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mediator of RNA polymerase II transcription subunit 24.
Parent gene
- The parent gene g9718 is located on chr_1: 4789423..4799394 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9718 | g9718.t2 | TSS | g9718.t2 | 4785973 | 4785973 |
| chr_1 | g9718 | g9718.t2 | isoform | g9718.t2 | 4786082 | 4787430 |
| chr_1 | g9718 | g9718.t2 | exon | g9718.t2.exon1 | 4786082 | 4786130 |
| chr_1 | g9718 | g9718.t2 | cds | g9718.t2.CDS1 | 4786082 | 4786130 |
| chr_1 | g9718 | g9718.t2 | exon | g9718.t2.exon2 | 4786522 | 4787430 |
| chr_1 | g9718 | g9718.t2 | cds | g9718.t2.CDS2 | 4786522 | 4787429 |
| chr_1 | g9718 | g9718.t2 | TTS | g9718.t2 | NA | NA |
Sequences
>g9718.t2 Gene=g9718 Length=958
ATGGATATTAAAAATAGACAGCAAAACATTCAAAAAATTCTTTTAAGAGCCTTTAGAGAA
AGATGGCCAGAATATCAATTTGGAATAAAAATCAAACAAGCTCTTCCATTAGCACTTCCA
GCAGACGCATATAATCTCACAGAAGTTTTATTGGATTTGAGTTTAATAGGAATTGGTGCA
AATAAACTTTTTCTCTCATATTTGAAGCATTCACTTCATTCTCATCTGATTAGTTATTCA
GCAGTAATTAAAAGAATAACTAAATATTCACAATATGAACGTTATTTCTGTCTCATTGCC
TTATTGGAATTTTTAATAAATATATCTGATACATGCTGTTGTAGAACAAAACCAGAAGAA
TCTTCTCTTATGAATGCTATTTTATCACTCGTTCATTGGCTTATTGAACTCAGTGAAAAG
ATATTTTTGAAAATAATGGAACAAAATAACATACCTACACATGAACAAAAGGTCTGTCTT
GAGAGAATCACCACACTCAACAATCGTATTGTCAATAATCAATTTTTAATGGGCATTATT
TACTTAGCTAAACTTGAGGATCGAGAACTCTATGAGAAATGCGTTATGAGCTATAAAAGA
ATTCATAGTTTAAGCAAAGAAGATTTTATTAAAGACTTTTATCAAATGATTTTTAACAAG
CTTGATCATATGCCGATGAAGGAATTAGAACCGAGATGTGTAGAATCGATTAGTGTTTGT
CTACAGCCTTTTATTGCAATTGAGGTATTGATAAATGCTAGTGCTGATGTAAGCGTTAAT
GTTTCAAAATTATTAATGATACAAAAGCTCAAAAAGTATTCGAATGCACGACTTTACCAT
GAGATCATAAGATCATGCTTCATTACACTTTGTCATGTGAAAGATGTCAATTATCGTATT
TGGGGTGCTTTCACGCTATGCAAAGTACCTTTGATTTTAAAACAACTTCATTTACAAG
>g9718.t2 Gene=g9718 Length=319
MDIKNRQQNIQKILLRAFRERWPEYQFGIKIKQALPLALPADAYNLTEVLLDLSLIGIGA
NKLFLSYLKHSLHSHLISYSAVIKRITKYSQYERYFCLIALLEFLINISDTCCCRTKPEE
SSLMNAILSLVHWLIELSEKIFLKIMEQNNIPTHEQKVCLERITTLNNRIVNNQFLMGII
YLAKLEDRELYEKCVMSYKRIHSLSKEDFIKDFYQMIFNKLDHMPMKELEPRCVESISVC
LQPFIAIEVLINASADVSVNVSKLLMIQKLKKYSNARLYHEIIRSCFITLCHVKDVNYRI
WGAFTLCKVPLILKQLHLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9718.t2 | PANTHER | PTHR12898 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24 | 5 | 317 | 0 |
| 1 | g9718.t2 | Pfam | PF11277 | Mediator complex subunit 24 N-terminal | 8 | 318 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016592 | mediator complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed