General information for g972.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutamate receptor ionotropic, NMDA 3A.
Parent gene
- The parent gene g972 is located on chr_3: 7196995..7213660 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g972 | g972.t1 | isoform | g972.t1 | 7196995 | 7213660 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon1 | 7196995 | 7198168 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS1 | 7196995 | 7198168 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon2 | 7198233 | 7198303 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS2 | 7198233 | 7198303 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon3 | 7198479 | 7198598 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS3 | 7198479 | 7198598 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon4 | 7199072 | 7199303 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS4 | 7199072 | 7199303 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon5 | 7199364 | 7199579 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS5 | 7199364 | 7199579 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon6 | 7199676 | 7199809 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS6 | 7199676 | 7199809 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon7 | 7199885 | 7199940 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS7 | 7199885 | 7199940 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon8 | 7200017 | 7200154 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS8 | 7200017 | 7200154 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon9 | 7200270 | 7200520 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS9 | 7200270 | 7200520 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon10 | 7200646 | 7200954 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS10 | 7200646 | 7200954 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon11 | 7202245 | 7202374 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS11 | 7202245 | 7202374 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon12 | 7202436 | 7202593 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS12 | 7202436 | 7202593 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon13 | 7202664 | 7202900 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS13 | 7202664 | 7202900 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon14 | 7203159 | 7204823 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS14 | 7203159 | 7204823 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon15 | 7204884 | 7205035 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS15 | 7204884 | 7205035 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon16 | 7205588 | 7205665 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS16 | 7205588 | 7205665 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon17 | 7208649 | 7208826 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS17 | 7208649 | 7208826 |
| chr_3 | g972 | g972.t1 | exon | g972.t1.exon18 | 7213362 | 7213660 |
| chr_3 | g972 | g972.t1 | cds | g972.t1.CDS18 | 7213362 | 7213660 |
| chr_3 | g972 | g972.t1 | TSS | g972.t1 | NA | NA |
| chr_3 | g972 | g972.t1 | TTS | g972.t1 | NA | NA |
Sequences
>g972.t1 Gene=g972 Length=5598
ATGTCATTGATGTCAATGCTTGTTCTACTTCTTGTACTAGCCACATCAATCAGTGGAAAT
GATCTTAATGGACCAAAAACTGAAGCTCTTGTACAAACAAAGACCGCAACAACAAATGAC
AACCTTCCAATTTTTCCTGAACGTTCCGATGCTGTTTACTTTGTGGTTGCTGTGAGTGGT
GGAATCAAAAGTTGGGGACGAGCATTGGCACGAACACTGCTTGATATTGGTGATATTTTT
AACAGTCCGCATGGACCACCATTGAGACCAATTTATGTCGATTTGCCAGCAAATGGAAGA
TTCTCTGCGAAAATCCTAACAACATTATGTGAGCAGATTGATGGCATACCTATAAGCGGC
ATTGTAGTTATTGGTGATGGACAAGCGGCAAGATCTATAGCTTTGTCTGGAAATGCCATG
CAAGTTCCTGTTTTATGGGCAAAAGGCGGAACTGCTCAGTTGCAGGAAAGTAGTGAGACA
CAAAACTACCTTCAAGCAACTTTACAGCCGTCTGCTAAGGAAATTTTGGAAGCTATCAGG
GCAATTTTTTTGCAAACACACTGGCATTCATTTTTTGTTCTTTCTGACATTGGATCGACA
ATGGTGCTGAATGGCAATTTAGGAAATATTTTAAAAAAATCACCTCTATCACCAACTGTT
TTGCCTCTCTCGAGTAATAGCAAGGACAACAAAGATGAAGTTTTTAGACAACTTGCCAAA
ATTTCACGCTCAACACGTGGCGTTGTGCTACTACTCTGTGATCTTAATATCGCTCGTCGA
ATAATGTCGGAAGCGACACGTTTAAAAATGACTGGTGGTCATTTTATTTGGTTATGGGCT
GATACAAGTTCAACTGCTGAGTTCTTTCAACCTTCAGATATTTCTGGTAGTGGTAGTGAA
GATAAAAGCAATTATGACGAATTCATGGGTCGTAAGAATGGAAGACAGCAACAAATTTAT
CAACAACAACAACAGGCAAATCGTCGTAACAATCAAACACGCTTCAAATCAATGAATTCA
AATCGCTTTCATCACATTGTTGGTGTTCGAAAGTCAACAGTTGGCGATGAATCGTTCATG
GGTCTTCCACCGCCTGCACAATCTGGTTATTTAAAAGGTGATAAACATCGTGATATAATA
ACACCAACAAACCAAATTCCAGTGAAAGATAAAAGAAGAGATCAGAAGCGTGTTGGAGTG
GGTAAAAAAGCTACACGTGTCGAAGAACCAAATACAAACGACGATGAGAGTGCAAATAGA
AGGCTTAATATTAAAAACATCAATAGTAATGAATTTAACGCCAATTATTATGATCCATAT
TCGCCAGCTTATAGACAAAATATTGATGAAAGTGATTTTGATGATTCAACTGATGAAGAA
TTGAATGTTTATTATGATTATGATAAATCAAATCCATTTAGTGCTGCTGTTCCTGCTACA
TCTTCAACAATAAGAAAAGATGCACAAATGAGATCATTAATTGATGATGATGATGAAAAT
GATGAAAAATTAGATTTAGAAAATTTTTCAGAATCAACAAATGACTCGAAATCAAAAAGA
GCAGATAATTCCTTCAACATTTCTTCGCACGTCTTTTTTCATCATTTTAAAGATTTCCCA
GTTGGTTTGCTCGCACTGCGTCACATAAAAATGAATGTTGATCGAGTATTTGTGCGGTCA
GCAATAAGATTATTTGCATCAACATGGGCGAAAGTCGAGAAGAATGAAGAAATTCGAGCT
GCAATGGGCAGTAATAGCGGCACAAGTACCACAAGTAGCATTAATAAATTAAATATTCGT
AAAATGTCAACAACGTTCGATTATGATGAATATGGCGATATGTTTAGAATAACAAACAAC
AACAATAAAATTAAAAATAAAGCGAACGTTAACAATCGTTATAGCAGTACTTCAGTACGC
GGAACAAGAAAATATAAACGCGAAGCACAAACAAATAGAGTAACAGCTAATAGCGAAAGA
TCAATTTTACCTTTGGTTAACAGTAGTGATAAAACAATTAACTTAATTAAAAATGAAAGT
GGCCTAAACACAACACAACAAATGCACTCGAGCGTCGTTGAAATTAAAAGCAATATCGAT
ACTATTAGTCGTAGCATTAATCTTAAAACTTTAAAACTTAATTCAAGTGATTCATCACAA
GCGGAAACTGTTGAGCATGGCAGAATAAGCGATGATGTGGAAAAAAGGGAAGTGAATAAA
CGACAGCAGACCAATTGGTGGTTGTCGAATAAAAATGGAAATGTTAAAAATCAGCAAGAT
AAAGTTAAAGTTACTGGCACGTTACAGTATAAGGGAGGATGCTTTGGAACTCTTGGGAAA
ACTGATTTAAAGAGATCGGAAATTTTTGCTAGATATTTACGTGAAGCTGTCACATTAGCA
TTATCAGGAAAGTCTCAAAATGGTGGAAATGTCGAGAAAGAAAAGGCTCTAATATCAAAT
TTTGAAATTTTAAATCTTGTTCCAAGTTATAGTAAAGTAGAAGAAAGCAAGAATGACATG
AAATCACCACAAACAGATCCTGTAAGCACAAAATGGAGACGCGTGGGACTCGTGCTTGGT
CGTAAAGTTCATTTAGACACGATTGTATGGCCTGGCGGGGACATTGTCGTTTCCGGTTTA
TCAGCACGAGCTCGAAGTGTTTTTCGTGTTGTAACTTCACTCTCACCGCCATTTGTTATG
GAATCGAATCTCGATGAAGATGGTTTATGTTTACGTGGTCTTCCATGCCATCGTCTTTCT
ACATCAGGGAAACATAATCTTACACTCATGTTCAATTCCATCGAGACGAATGAGAGACTT
CTTGAAGATGCTGTAGAACATGGCAATCAAATCCCCGTAAACGAAGATCATAAATCAAAC
GACAAACTTTCATACAACACTCGCTGTTGTTATGGTTTATCGATGGATTTATTGGATAAT
GTTGCATCAGAACTTGGCTTTGGATACATTCTTTATATTGTTAGTGATGAGCTTTTTGGA
TCAAAACAAATTGTCAGTAATAAAAAGTCAAATATTCATGATTTTAATCGCTCTCAAGAT
CCTATTCAAGAGCAATCGAAAGAAAGAGAAAGAAGTGCAAGAAAGTTTAACAAGAAACAG
CACGACCAACCTCAATGGAATGGAATAATCGGTGATTTGGTAGCCGGCTCAGCTGACATG
TCTTTCGCACCATTGAGTGTATCAAAAGCACGTGCGGAAGTGATTGACTTCAGTGCTCCT
TACTTTCATAGTGGCATTTCACTGCTGGCAGCACCGAAAGCACGAATCGACATACCACTG
TTTGCATTTCTTATGCCCTTCTCACCTGAATTATGGATTGGTGTTTTTATCTGGCTCAAT
CTCACTGCCATCGCTGTTGCCATCTATGAATGGCTTTCACCTTTTGGGCTTAATCCTTGG
GGTCGACAAAGGAGTAAAAATTTTAGTCTTTCATCTGCATTATGGGTAATGTGGGGATTG
TTGTTTGGTCACTTAGTAGCATTCAAAGCACCAAAATCATGGCCAAATAAATTCCTCATA
AATGTCTGGGGTGGCTTTTCTGTCATTTTTATCGCAAGTTACACTGCCAACATCGCGGCT
CTCATCGCTGGCCTTTTCTTTCAGAATTCTGCCAACACCTATGATACATCGCTACTGACA
CAACGCGTTGGCATTCCAAGGGCGTCGGCTGCAGAATCATATATTCAACGCTATGATAAG
CATTTGTGGGAACGAATGAAAAAATACACGTTTAATAGCATTGAGGAAGGAATTCAGGGA
CTAAAAAATGGCACGATTGATTTACTGATGGCCGATTCTCCTATTCTTGATTACTATCGG
GGCAGTGATCATGGTTGTAATTTACGTCGCATAGGAGAGAATTATGTTGAAGATACTTAT
GCAATTGGTATGAGCAAAGGTTTTCCCCTCAAGGAATCAATATCAGCACTGATAGCAAAA
TATTCAAGTAATGGATATTTGGATATACTTGTTGAAAAATGGTATGGCGGATTACCTTGT
TATCGTGATGAAGATCATATTGAAATTGTTCAGCCGAGACCATTAGGCGTTGAGGCTGTT
GCTGGTGTATTCTTATTACTCGGTCTTGGAATGATTTTGGGAGTTTTCATTTTGGTATTT
GAACACATGTTCTTTAAGTATTATTTGCCAAGATTACGTCATCAACCTAAAGGTTCTATT
TGGAGAAGCAGAAATTTGATGTTCTTTAGTCAGAAACTTTATCGTTTCATAAATTGTGTG
GAGTTGGTTTCACCACATCATGCGGCTAGAGAGTTAGTTCACACATTACGAAAAGGACAT
ATCACAAGTCTCTTCCAAAAGAGTGTTAAGAGGAAGGAAGATGAACAGCGTCGTCGTCGA
AAGAGCAAAGCGCAATTTTTTGAGATGATACAAGAGATAAGACGAGTTCAACAGGAAGAA
AAGGAACAGCCACAAATACCAAAACTTGAAGTTGTAGAGGAAGCAGTAGTTGAGCCTTCA
ACGCCAATTCCATCCAGTCCGAATCCTGAAATTCAATCGATTGCTTCATCAGCAACTTCT
GTTCAAAAACCAAAAGCAAGTCCAAAGTTGCGATTGTTTAGTCTCAAACGTGACAGCAAT
TCAAGATCCAACTCATCATCGCTGAATGTTCGTCGCTTTAGTACTGATAGCATTTTGGGT
GAACGACTTGATACAATTGGTCGTCGATTGAGTCGCGATATTGCCAGTGATCTCGCAAAT
TCACCGCCTGATTTGGGTCATCGATTTGAAACTTTTGGTAAAGCAATGGGCGAGTCAAAG
TTTGACACTTTCTCAGGCAAGACGGCTATCACGAAGTCGGCAGATAATCTCGATAAACCA
CATGAGAAAAGTAAGTTTGACACTTTCAGTGGAACTGTTGATGATCATCTTATGCGTCCA
GAATTGCCAGTTAAGAAAAATCAAAAATTGAAACCAAAAAGAAAGCCTTTAAGTGTCGAT
ACTTATGAACTCAGACCGTCATTCGAGAGTCAGTCTACGCTGCCTCTGAGGGATTTACCA
AGAGAGCCCTCACAAAAAGAGTCCTTCAGAGACACCTTACATCCTGCCATCTTCCAAATT
GATCATAGTAAAGCCGTCTTGCGTGATAAATTGCATGAAGAGTTGCGTGAGAAATATGGA
GCAAATAATAAAAAGCCATTACTTAAAGCAAAACCGCCTAAGGTACCAAGTATCAATCAT
CGACCGCCACTTAGAATTCAAAGTCAAAATCCAAATGATAGCTTTTTAAAAGTACAAAGT
AATGATGCGCCTAGCTCTCGACCTGTGCCATCACCAAGAACGTCCAAACAGCAACAAACA
CAGAGATTCACAGACGATGATGATGATGATCAACCTGATCCAACTTATGCTACTATACAG
CCTCGTAATAAAAGTCCTCGACTTCCACCTCAAAATCCACAACATCATCCACAGCAGTCT
ATGCATAGCAATCTTCCATTAGGTCGTTTATCAAAAGAAGATTTACTCGATCTAAGTCAA
AAATCAGAGTCTGAAATTCACGAATTTCTTAATGGTGGAAACAAAACAAAACAAAAAACA
CGAATGGATCCGCCCTGA
>g972.t1 Gene=g972 Length=1865
MSLMSMLVLLLVLATSISGNDLNGPKTEALVQTKTATTNDNLPIFPERSDAVYFVVAVSG
GIKSWGRALARTLLDIGDIFNSPHGPPLRPIYVDLPANGRFSAKILTTLCEQIDGIPISG
IVVIGDGQAARSIALSGNAMQVPVLWAKGGTAQLQESSETQNYLQATLQPSAKEILEAIR
AIFLQTHWHSFFVLSDIGSTMVLNGNLGNILKKSPLSPTVLPLSSNSKDNKDEVFRQLAK
ISRSTRGVVLLLCDLNIARRIMSEATRLKMTGGHFIWLWADTSSTAEFFQPSDISGSGSE
DKSNYDEFMGRKNGRQQQIYQQQQQANRRNNQTRFKSMNSNRFHHIVGVRKSTVGDESFM
GLPPPAQSGYLKGDKHRDIITPTNQIPVKDKRRDQKRVGVGKKATRVEEPNTNDDESANR
RLNIKNINSNEFNANYYDPYSPAYRQNIDESDFDDSTDEELNVYYDYDKSNPFSAAVPAT
SSTIRKDAQMRSLIDDDDENDEKLDLENFSESTNDSKSKRADNSFNISSHVFFHHFKDFP
VGLLALRHIKMNVDRVFVRSAIRLFASTWAKVEKNEEIRAAMGSNSGTSTTSSINKLNIR
KMSTTFDYDEYGDMFRITNNNNKIKNKANVNNRYSSTSVRGTRKYKREAQTNRVTANSER
SILPLVNSSDKTINLIKNESGLNTTQQMHSSVVEIKSNIDTISRSINLKTLKLNSSDSSQ
AETVEHGRISDDVEKREVNKRQQTNWWLSNKNGNVKNQQDKVKVTGTLQYKGGCFGTLGK
TDLKRSEIFARYLREAVTLALSGKSQNGGNVEKEKALISNFEILNLVPSYSKVEESKNDM
KSPQTDPVSTKWRRVGLVLGRKVHLDTIVWPGGDIVVSGLSARARSVFRVVTSLSPPFVM
ESNLDEDGLCLRGLPCHRLSTSGKHNLTLMFNSIETNERLLEDAVEHGNQIPVNEDHKSN
DKLSYNTRCCYGLSMDLLDNVASELGFGYILYIVSDELFGSKQIVSNKKSNIHDFNRSQD
PIQEQSKERERSARKFNKKQHDQPQWNGIIGDLVAGSADMSFAPLSVSKARAEVIDFSAP
YFHSGISLLAAPKARIDIPLFAFLMPFSPELWIGVFIWLNLTAIAVAIYEWLSPFGLNPW
GRQRSKNFSLSSALWVMWGLLFGHLVAFKAPKSWPNKFLINVWGGFSVIFIASYTANIAA
LIAGLFFQNSANTYDTSLLTQRVGIPRASAAESYIQRYDKHLWERMKKYTFNSIEEGIQG
LKNGTIDLLMADSPILDYYRGSDHGCNLRRIGENYVEDTYAIGMSKGFPLKESISALIAK
YSSNGYLDILVEKWYGGLPCYRDEDHIEIVQPRPLGVEAVAGVFLLLGLGMILGVFILVF
EHMFFKYYLPRLRHQPKGSIWRSRNLMFFSQKLYRFINCVELVSPHHAARELVHTLRKGH
ITSLFQKSVKRKEDEQRRRRKSKAQFFEMIQEIRRVQQEEKEQPQIPKLEVVEEAVVEPS
TPIPSSPNPEIQSIASSATSVQKPKASPKLRLFSLKRDSNSRSNSSSLNVRRFSTDSILG
ERLDTIGRRLSRDIASDLANSPPDLGHRFETFGKAMGESKFDTFSGKTAITKSADNLDKP
HEKSKFDTFSGTVDDHLMRPELPVKKNQKLKPKRKPLSVDTYELRPSFESQSTLPLRDLP
REPSQKESFRDTLHPAIFQIDHSKAVLRDKLHEELREKYGANNKKPLLKAKPPKVPSINH
RPPLRIQSQNPNDSFLKVQSNDAPSSRPVPSPRTSKQQQTQRFTDDDDDDQPDPTYATIQ
PRNKSPRLPPQNPQHHPQQSMHSNLPLGRLSKEDLLDLSQKSESEIHEFLNGGNKTKQKT
RMDPP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g972.t1 | Gene3D | G3DSA:3.40.50.2300 | - | 173 | 342 | 1.5E-10 |
| 12 | g972.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1102 | 1214 | 6.0E-18 |
| 13 | g972.t1 | Gene3D | G3DSA:3.40.190.10 | - | 1215 | 1297 | 7.7E-16 |
| 38 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 421 | - |
| 43 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 423 | - |
| 37 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 520 | - |
| 36 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1515 | 1549 | - |
| 40 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1642 | 1689 | - |
| 42 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1642 | 1660 | - |
| 35 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1664 | 1678 | - |
| 44 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1718 | 1865 | - |
| 41 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1742 | 1779 | - |
| 39 | g972.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1834 | 1865 | - |
| 4 | g972.t1 | PANTHER | PTHR18966 | IONOTROPIC GLUTAMATE RECEPTOR | 43 | 1530 | 0.0 |
| 5 | g972.t1 | PANTHER | PTHR18966:SF448 | AGAP005527-PA | 43 | 1530 | 0.0 |
| 7 | g972.t1 | PRINTS | PR00177 | NMDA receptor signature | 987 | 1015 | 3.6E-5 |
| 6 | g972.t1 | PRINTS | PR00177 | NMDA receptor signature | 1360 | 1384 | 3.6E-5 |
| 3 | g972.t1 | Pfam | PF01094 | Receptor family ligand binding region | 119 | 285 | 1.0E-9 |
| 1 | g972.t1 | Pfam | PF00497 | Bacterial extracellular solute-binding proteins, family 3 | 1041 | 1336 | 7.0E-24 |
| 2 | g972.t1 | Pfam | PF00060 | Ligand-gated ion channel | 1337 | 1371 | 2.5E-19 |
| 20 | g972.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 21 | g972.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 22 | g972.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 14 | - |
| 27 | g972.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 19 | g972.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 1110 | - |
| 24 | g972.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1111 | 1132 | - |
| 16 | g972.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1133 | 1152 | - |
| 25 | g972.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1153 | 1170 | - |
| 18 | g972.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1171 | 1181 | - |
| 26 | g972.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1182 | 1207 | - |
| 15 | g972.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1208 | 1358 | - |
| 23 | g972.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1359 | 1380 | - |
| 17 | g972.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1381 | 1865 | - |
| 34 | g972.t1 | SMART | SM00079 | GluR_14 | 950 | 1337 | 3.1E-20 |
| 33 | g972.t1 | SMART | SM00918 | Lig_chan_Glu_bd_2 | 962 | 1055 | 0.0075 |
| 8 | g972.t1 | SUPERFAMILY | SSF53822 | Periplasmic binding protein-like I | 111 | 294 | 5.57E-8 |
| 9 | g972.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 884 | 1337 | 8.25E-43 |
| 11 | g972.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 28 | g972.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 10 | g972.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 20 | - |
| 32 | g972.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1111 | 1133 | - |
| 29 | g972.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1146 | 1168 | - |
| 30 | g972.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1183 | 1205 | - |
| 31 | g972.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1363 | 1385 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0038023 | signaling receptor activity | MF |
| GO:0016020 | membrane | CC |
| GO:0015276 | ligand-gated ion channel activity | MF |
| GO:0005216 | ion channel activity | MF |
| GO:0004970 | ionotropic glutamate receptor activity | MF |
| GO:0006811 | ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K05213 (glutamate receptor ionotropic, NMDA 3A)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
