General information for g9742.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Maltase A1.
Parent gene
- The parent gene g9742 is located on chr_1: 4903845..4906065 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9742 | g9742.t1 | isoform | g9742.t1 | 4903845 | 4906065 |
| chr_1 | g9742 | g9742.t1 | exon | g9742.t1.exon1 | 4903845 | 4903977 |
| chr_1 | g9742 | g9742.t1 | cds | g9742.t1.CDS1 | 4903845 | 4903977 |
| chr_1 | g9742 | g9742.t1 | exon | g9742.t1.exon2 | 4904040 | 4904407 |
| chr_1 | g9742 | g9742.t1 | cds | g9742.t1.CDS2 | 4904040 | 4904407 |
| chr_1 | g9742 | g9742.t1 | exon | g9742.t1.exon3 | 4904709 | 4904837 |
| chr_1 | g9742 | g9742.t1 | cds | g9742.t1.CDS3 | 4904709 | 4904837 |
| chr_1 | g9742 | g9742.t1 | exon | g9742.t1.exon4 | 4904899 | 4906065 |
| chr_1 | g9742 | g9742.t1 | cds | g9742.t1.CDS4 | 4904899 | 4906065 |
| chr_1 | g9742 | g9742.t1 | TSS | g9742.t1 | NA | NA |
| chr_1 | g9742 | g9742.t1 | TTS | g9742.t1 | NA | NA |
Sequences
>g9742.t1 Gene=g9742 Length=1797
ATGAAGTCAATTGTGAAGATTTTATTTCTTATAATTTTATCAAATTTAACAAGAGCAGAA
TGGTACGATAATGGAGCTTTTTATCAAATTTATCCACGTTCATTTAAAGACAGTGATGGT
GATGGCATTGGTGATATTAAGGGAATAAAATCAAAAATAAATTACTTAAAAGATCTCGGT
GTTGATGCAGTTTGGCTTTCGCCTATCATGCAATCGCCAATGGCTGATTTTGGTTATGAT
ATTTCAGACTATCGAAATATTCATCATGAATACGGCACATTGAGTGATTTTGATGAATTA
ATTGAAGAATGTAAACAAATTGGCTTGCGACTTATCTTAGATTTTGTTCCAAATCATTCC
TCTGATGAACATGAATGGTTCAAGCGTTCAGAAAGAAATGAAACTGAATTTAAAGATTTT
TATATCTGGAGAAATCCACGACATGATGAAATTTCAAATATTAAAATTCCTCCAACAAAT
TGGCTTTCAGTTTTTCGCTATTCTGCATGGCGATGGTCAGAAATTCGACAGCAAATGTAT
TATCACATGTTCCAAAGTAAACAACCTGATTTAAATTACAGAAATCCACAAGTTGTGAAA
GAAATGAAAGCAATTTTAACTTATTGGCTTGAAAAAGGAGTTTCAGGTTTCCGAATTGAC
GCAATTCCTGCATTATTTGAGAAAATTCAACCAGATGGAAGTTTTTTAGACGAGCCAAGA
TCTTATAATAAAGATTGTGACGCACATGACCATTGTTATCTTAAAAATATTTATACAGAA
GACCAACCTGAAACATACGACATGGTCTATCAATGGAGAAAACTTGTCGATGACTTTGCA
AGTGCTAACAATGTCGAGAAAAAAATTCTCATGGTCGAATCAGCCGCACCTGTTGATTTA
AACATTCTCTATTATGGTAACTCAACAATGGAAGGCGCACATTTTCCATTTTATTTTGAC
TTGCTGCTACAAATTACAAAAAATAGCACAGCTGAGGATTATAAAAGATTGATTGAAATT
TGGATTGAAAAAGTGCCCAAAAATCACATGCCTAATTGGGTATTGGGTAATCACGATAGA
GGAAGAATTGCTACAAGATTGGGAAAAGAAAAGGGTGATTTATTGAATATTATGCTGCAA
ACTTTGCCAGGGTGTTCTATCACATATATGGGAGAAGAATTATTGATGGAAAATGTGCCA
GTTTCATGGGAGGAAACAATTGATCCACTTGCTTGTAATTCACCGAAAGAAGAGCTAGAA
ATTAGATCAAGAGATCCTGTTAGAACTCCTTTTCCTTGGGATGATTCAAAAAATGCAGGC
TTCTCAACAACGAATAATAAAACTTGGTTGCCAGTAGGCGATAACTATAAAACAGTAAAT
GTGAAAGCTCAAGAAGAAGCAACAAACAGTCATCTTAAAATATATAGAAAGCTTACGAAA
ATTCGTAAAGAACCTCGATTTAAAGTGGGCACTTATCAAGGGCATCTTGTGAATGACAAT
AACATTTACACCTACATAAGGCAACACGAAAGCAATTTTGCTATTATTCTATTGAACTTT
GGAAAAAATGATGAAACTGTTGACGTCAAGAAAGTTTATGATAAGGTTAATATTACAAGG
TTGAGCATCTACACATCTTCATTAGATTCTGGGTTGAAAGATGGTGACTTTGTCGATATT
TCTGCTCTTAAAATTAAAGCCAATAATGGAATTGTTTTGATAAATTCTTCAAATGTTGTG
CAATTCAGTAGCTTTATTATGATTGTGTTTTTGATTGCTTTCAAATACGTTGGTTAG
>g9742.t1 Gene=g9742 Length=598
MKSIVKILFLIILSNLTRAEWYDNGAFYQIYPRSFKDSDGDGIGDIKGIKSKINYLKDLG
VDAVWLSPIMQSPMADFGYDISDYRNIHHEYGTLSDFDELIEECKQIGLRLILDFVPNHS
SDEHEWFKRSERNETEFKDFYIWRNPRHDEISNIKIPPTNWLSVFRYSAWRWSEIRQQMY
YHMFQSKQPDLNYRNPQVVKEMKAILTYWLEKGVSGFRIDAIPALFEKIQPDGSFLDEPR
SYNKDCDAHDHCYLKNIYTEDQPETYDMVYQWRKLVDDFASANNVEKKILMVESAAPVDL
NILYYGNSTMEGAHFPFYFDLLLQITKNSTAEDYKRLIEIWIEKVPKNHMPNWVLGNHDR
GRIATRLGKEKGDLLNIMLQTLPGCSITYMGEELLMENVPVSWEETIDPLACNSPKEELE
IRSRDPVRTPFPWDDSKNAGFSTTNNKTWLPVGDNYKTVNVKAQEEATNSHLKIYRKLTK
IRKEPRFKVGTYQGHLVNDNNIYTYIRQHESNFAIILLNFGKNDETVDVKKVYDKVNITR
LSIYTSSLDSGLKDGDFVDISALKIKANNGIVLINSSNVVQFSSFIMIVFLIAFKYVG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9742.t1 | CDD | cd11328 | AmyAc_maltase | 20 | 493 | 0.0 |
| 7 | g9742.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 21 | 483 | 2.8E-165 |
| 8 | g9742.t1 | Gene3D | G3DSA:3.90.400.10 | - | 121 | 195 | 2.8E-165 |
| 2 | g9742.t1 | PANTHER | PTHR10357 | ALPHA-AMYLASE FAMILY MEMBER | 6 | 574 | 1.7E-227 |
| 3 | g9742.t1 | PANTHER | PTHR10357:SF175 | MALTASE A1 | 6 | 574 | 1.7E-227 |
| 1 | g9742.t1 | Pfam | PF00128 | Alpha amylase, catalytic domain | 44 | 399 | 2.2E-97 |
| 11 | g9742.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 12 | g9742.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 13 | g9742.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 14 | - |
| 15 | g9742.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 10 | g9742.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 578 | - |
| 14 | g9742.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 579 | 597 | - |
| 9 | g9742.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 598 | 598 | - |
| 18 | g9742.t1 | SMART | SM00642 | aamy | 29 | 428 | 1.3E-122 |
| 5 | g9742.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 20 | 484 | 6.13E-119 |
| 4 | g9742.t1 | SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 490 | 533 | 8.74E-5 |
| 6 | g9742.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 17 | g9742.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 572 | 594 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01182 (oligo-1,6-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
