General information for g9757.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Vanin-like protein 2.
Parent gene
- The parent gene g9757 is located on chr_1: 5040470..5043639 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9757 | g9757.t1 | TTS | g9757.t1 | 5039881 | 5039881 |
| chr_1 | g9757 | g9757.t1 | isoform | g9757.t1 | 5040470 | 5043639 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon1 | 5040470 | 5040680 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS1 | 5040470 | 5040680 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon2 | 5041140 | 5041688 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS2 | 5041140 | 5041688 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon3 | 5041915 | 5042139 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS3 | 5041915 | 5042139 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon4 | 5042503 | 5042566 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS4 | 5042503 | 5042566 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon5 | 5042802 | 5042878 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS5 | 5042802 | 5042878 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon6 | 5042975 | 5043126 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS6 | 5042975 | 5043126 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon7 | 5043206 | 5043505 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS7 | 5043206 | 5043505 |
| chr_1 | g9757 | g9757.t1 | exon | g9757.t1.exon8 | 5043589 | 5043639 |
| chr_1 | g9757 | g9757.t1 | cds | g9757.t1.CDS8 | 5043589 | 5043639 |
| chr_1 | g9757 | g9757.t1 | TSS | g9757.t1 | 5043712 | 5043712 |
Sequences
>g9757.t1 Gene=g9757 Length=1629
ATGAAAAAGTTTTGGATTAATTTTTTTGGCATTTTAACCTGTTGGGAATATGTTAATGGC
AACAAAGATGACTTTTATACAGCAGCTGTTGTTGAATTTCCAACATCACCTCATTCAGCA
GTCACAAATGTTGAAAGCATGATAGAGGATACGCTCAATGAATACTTGAGATTGATTAAT
GAAGCCGCAGAGAGTGGCGTGGATATTGTAGCATTTCCAGAAGGCACTCTTAATTATGTA
GGAATCGCAACACGTAGACTGCTGATTAAGCATGCTGTTGAATTAAGTGATGGCGATATT
TATAATAGCACTGACTTTAACAACAAATGTAATTATTCAAAAAAGTCACCTATTATTTCA
CGAATATCACTCAAGTCGCGAGAAAATAGGATTTACGTTCTGATAAATACAATTGAGAGG
GTAAAATCCACGAGAGACAATAAAGCATACAATTTGTATAACACGAATATTGTATTCGAT
CGTAATGGATGCATTGTATCAAGATATCGTAAATATAATACCAAGTTAGATCCATTGTTA
AATCGTACAGAAATCGCTCAAGTTCAAGTTTTTCAAACGGATTTCGATGTTGTCTTTGGT
CATTTTACATCACTTGACATTATTTCCAAATATCCAGCATATATAATGATGCAGTATGGT
ATTCAACATATTTTACATCCAACTCTATGGTATTCATCTACACCATTTTATGCATCACTA
CAATTGTATCAAGGATTCAGTTATGCAAACAATATCGCTCTCATGGTAGCCGGTGCTAAC
AATCTTGTATCAGGGCAAGGTGGGAGTGGAATTTTCGTAGGTACAAGTGGAGCACTAGTT
ATGTATCAACCAGGAGGTGAACGAATGCAACAAATGATAATATCGAAAATTCCGAAACAT
CTCGACACGTACTCAATACGAAGTGACAACAATAACATTGTGAAACGATACAATCAAAAG
GAAATGGACCAGCTTTTCATATCGGTAATTCCAGTAAAGAACACCCACGCTTTAGTTAAT
CAAGAATTCAAAAAGGTTTGTAAGGGTAAATTATGTTGCGAGTTTTACCTAAAATACGAA
TCCTACGACAAACCAATTGCCCCAAAACTTGGCTACAGTTATCGACTGTCAATATTTTCG
GGTAGCGATGAATATCTAGATGAAAACTCACATGAAATGCATTGTGCGATTGTAGCATGC
ACGGAAAAAGAAAGCAATTGCGGTTCGAGATTTGTGCCATCTGATAATGTCGTTGCTACA
GTTAAATTTAGTGAAATACACGTAAGTATGACTGTCGAATTAGAGGAACTGGAAGATATC
GATTTGATGGTAATGCCGACAAACATTGACTTTTTGTTGCTGCCGCTGCGAGTTGATGAT
TTTGCCTACACAGCGAGTGACGTTTTTAATGAAAATAATAAGCAATATAAAAAATACACA
GCAACATTGCTCTCTGAAACAGATAAAATTTTGACCTTTGGTGTATTGGGAAGAGGCTTT
CAACTAGCCGAGTTTCATGTAGATGACAATGATTTTGAAAATGATTTGCTGTGGTGGTAC
TTGTTGAGTACGATGATCTTTGGTGCATCACTTATGGTAATTGTATGGAGATTAACTAGA
GATAAATAG
>g9757.t1 Gene=g9757 Length=542
MKKFWINFFGILTCWEYVNGNKDDFYTAAVVEFPTSPHSAVTNVESMIEDTLNEYLRLIN
EAAESGVDIVAFPEGTLNYVGIATRRLLIKHAVELSDGDIYNSTDFNNKCNYSKKSPIIS
RISLKSRENRIYVLINTIERVKSTRDNKAYNLYNTNIVFDRNGCIVSRYRKYNTKLDPLL
NRTEIAQVQVFQTDFDVVFGHFTSLDIISKYPAYIMMQYGIQHILHPTLWYSSTPFYASL
QLYQGFSYANNIALMVAGANNLVSGQGGSGIFVGTSGALVMYQPGGERMQQMIISKIPKH
LDTYSIRSDNNNIVKRYNQKEMDQLFISVIPVKNTHALVNQEFKKVCKGKLCCEFYLKYE
SYDKPIAPKLGYSYRLSIFSGSDEYLDENSHEMHCAIVACTEKESNCGSRFVPSDNVVAT
VKFSEIHVSMTVELEELEDIDLMVMPTNIDFLLLPLRVDDFAYTASDVFNENNKQYKKYT
ATLLSETDKILTFGVLGRGFQLAEFHVDDNDFENDLLWWYLLSTMIFGASLMVIVWRLTR
DK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9757.t1 | Gene3D | G3DSA:3.60.110.10 | - | 11 | 304 | 1.8E-47 |
| 3 | g9757.t1 | PANTHER | PTHR10609:SF14 | BIOTINIDASE | 13 | 516 | 2.7E-81 |
| 4 | g9757.t1 | PANTHER | PTHR10609 | BIOTINIDASE-RELATED | 13 | 516 | 2.7E-81 |
| 2 | g9757.t1 | Pfam | PF00795 | Carbon-nitrogen hydrolase | 35 | 231 | 1.4E-11 |
| 1 | g9757.t1 | Pfam | PF19018 | Vanin C-terminal domain | 341 | 501 | 1.7E-24 |
| 9 | g9757.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 516 | - |
| 10 | g9757.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 517 | 538 | - |
| 8 | g9757.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 539 | 542 | - |
| 12 | g9757.t1 | ProSiteProfiles | PS50263 | Carbon-nitrogen hydrolase domain profile. | 26 | 299 | 26.723 |
| 5 | g9757.t1 | SUPERFAMILY | SSF56317 | Carbon-nitrogen hydrolase | 23 | 276 | 1.44E-26 |
| 6 | g9757.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 11 | g9757.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 516 | 538 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006807 | nitrogen compound metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed