General information for g9758.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Allatostatin-A receptor.
Parent gene
- The parent gene g9758 is located on chr_1: 5050081..5057908 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9758 | g9758.t1 | isoform | g9758.t1 | 5050081 | 5057908 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon1 | 5050081 | 5050121 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS1 | 5050081 | 5050121 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon2 | 5050782 | 5050863 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS2 | 5050782 | 5050863 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon3 | 5053258 | 5053413 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS3 | 5053258 | 5053413 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon4 | 5054665 | 5054859 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS4 | 5054665 | 5054859 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon5 | 5055087 | 5055234 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS5 | 5055087 | 5055234 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon6 | 5055325 | 5055455 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS6 | 5055325 | 5055455 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon7 | 5056761 | 5056788 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS7 | 5056761 | 5056788 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon8 | 5056891 | 5056930 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS8 | 5056891 | 5056930 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon9 | 5057081 | 5057121 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS9 | 5057081 | 5057121 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon10 | 5057195 | 5057240 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS10 | 5057195 | 5057240 |
| chr_1 | g9758 | g9758.t1 | exon | g9758.t1.exon11 | 5057746 | 5057908 |
| chr_1 | g9758 | g9758.t1 | cds | g9758.t1.CDS11 | 5057746 | 5057908 |
| chr_1 | g9758 | g9758.t1 | TSS | g9758.t1 | NA | NA |
| chr_1 | g9758 | g9758.t1 | TTS | g9758.t1 | NA | NA |
Sequences
>g9758.t1 Gene=g9758 Length=1071
ATGTTTGGAGAAGTGTGCAATAATTACACGCATACCTTTTTATGGGGCAACGAGACAATC
CAATTTGACCATGAACTCGAATGCACTGTCTCTAAAACGGTCTTCATACTCTTCACATTT
ATTGGAATTGCTGGTCTCGTTGGAAATGCACTCGTGGTGCTCGTTGTTGCCGCAAATCCC
ATGATGAGATCGACGACTAACATTCTAATAATAAACTTGGCCGTTGCCGATCTGCTATTT
GTGATATTTTGCGTTCCTTTCACTGGTTTCGATTATGTCCTTGCAAGCTGGCCATTTGGG
ACGACGTGGTGTTCAACTGTTCAGTATATGATAGTAGTGACATGCCATGCAAGTGTATAT
ACACTTGTTCTGATGTCACTTGACCGATTTCTGGCTGTCGTTCATCCAATTTCTAGCATT
TCAATACGAACGCAACGAAATGCGTTATTTGCGATCATAATAACATGGCTAATTGTCACA
ACAACTGCCTTTCCCGTTTTTATGTCTCACGGCGAAGTGCAATATTACAATCATCGAAAT
GAAGTGAACACAGCATGTTTATTTTTAAACGATGTCTATAACCTAGCAGCCTTTCAAATC
TCGTTTTTCCTCTCGTCCTATGTAATACCATTAGCGCTTATTTCAATTTTATATGTTGGT
ATGCTAATACGACTCTGGCATAGTGTGCCGGGAAGTAAAGTGTCAGCAGAATCGAGACGC
GGAAAAAAACGTGTAACACGGATGGTTGTGTTTGTCGTATTAGCCTTTGCCATATGTTGG
TTGCCTATTCATATTGTTCTTGTATTAAAGTCATTACATATGTATGAAACAAGTCGTTTA
GGCGTATCCATACAAATTTTTAGTCATGTACTTGCGTACACAAATAGTTTTATAAATCCA
ATCTTGTACAATTGCTTCTCTAAAAACTTTCGAAAGGCCTTTAGAAAAATAGTCTGGTGC
GGAAAGCCAATACCTCTGGGAACTACAAATGCTCAGATCACGAAAGCCGGAACAACAAGA
ACAACTACAGCCGCCCAAAACGGGGGAATTTCACCCCCCGAATTCCTCTAA
>g9758.t1 Gene=g9758 Length=356
MFGEVCNNYTHTFLWGNETIQFDHELECTVSKTVFILFTFIGIAGLVGNALVVLVVAANP
MMRSTTNILIINLAVADLLFVIFCVPFTGFDYVLASWPFGTTWCSTVQYMIVVTCHASVY
TLVLMSLDRFLAVVHPISSISIRTQRNALFAIIITWLIVTTTAFPVFMSHGEVQYYNHRN
EVNTACLFLNDVYNLAAFQISFFLSSYVIPLALISILYVGMLIRLWHSVPGSKVSAESRR
GKKRVTRMVVFVVLAFAICWLPIHIVLVLKSLHMYETSRLGVSIQIFSHVLAYTNSFINP
ILYNCFSKNFRKAFRKIVWCGKPIPLGTTNAQITKAGTTRTTTAAQNGGISPPEFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g9758.t1 | CDD | cd15096 | 7tmA_AstA_R_insect | 33 | 314 | 1.90774E-126 |
| 16 | g9758.t1 | Gene3D | G3DSA:1.20.1070.10 | - | 6 | 346 | 4.0E-84 |
| 2 | g9758.t1 | PANTHER | PTHR24243 | G-PROTEIN COUPLED RECEPTOR | 22 | 342 | 1.4E-70 |
| 7 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 33 | 57 | 1.1E-48 |
| 6 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 66 | 87 | 1.1E-48 |
| 12 | g9758.t1 | PRINTS | PR00663 | Galanin receptor signature | 80 | 94 | 4.8E-12 |
| 14 | g9758.t1 | PRINTS | PR00663 | Galanin receptor signature | 97 | 115 | 4.8E-12 |
| 4 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 111 | 133 | 1.1E-48 |
| 11 | g9758.t1 | PRINTS | PR00663 | Galanin receptor signature | 139 | 155 | 4.8E-12 |
| 8 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 147 | 168 | 1.1E-48 |
| 10 | g9758.t1 | PRINTS | PR00663 | Galanin receptor signature | 194 | 209 | 4.8E-12 |
| 5 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 199 | 222 | 1.1E-48 |
| 3 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 245 | 269 | 1.1E-48 |
| 13 | g9758.t1 | PRINTS | PR00663 | Galanin receptor signature | 272 | 292 | 4.8E-12 |
| 9 | g9758.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 285 | 311 | 1.1E-48 |
| 1 | g9758.t1 | Pfam | PF00001 | 7 transmembrane receptor (rhodopsin family) | 48 | 303 | 1.8E-56 |
| 22 | g9758.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 33 | - |
| 30 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 57 | - |
| 20 | g9758.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 58 | 68 | - |
| 27 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 89 | - |
| 24 | g9758.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 90 | 108 | - |
| 26 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 109 | 127 | - |
| 19 | g9758.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 128 | 147 | - |
| 31 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 148 | 168 | - |
| 23 | g9758.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 169 | 206 | - |
| 29 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 227 | - |
| 17 | g9758.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 228 | 247 | - |
| 25 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 266 | - |
| 21 | g9758.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 267 | 285 | - |
| 28 | g9758.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 286 | 306 | - |
| 18 | g9758.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 307 | 356 | - |
| 41 | g9758.t1 | ProSitePatterns | PS00237 | G-protein coupled receptors family 1 signature. | 117 | 133 | - |
| 42 | g9758.t1 | ProSiteProfiles | PS50262 | G-protein coupled receptors family 1 profile. | 48 | 303 | 49.58 |
| 40 | g9758.t1 | SMART | SM01381 | 7TM_GPCR_Srsx_2 | 42 | 318 | 3.9E-5 |
| 15 | g9758.t1 | SUPERFAMILY | SSF81321 | Family A G protein-coupled receptor-like | 20 | 326 | 1.28E-73 |
| 39 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 56 | - |
| 35 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 90 | - |
| 34 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 127 | - |
| 36 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 147 | 169 | - |
| 33 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 219 | - |
| 38 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 249 | 269 | - |
| 37 | g9758.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 306 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0004930 | G protein-coupled receptor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K04233 (allatostatin A receptor)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed