Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9760 g9760.t1 isoform g9760.t1 5060185 5061111
chr_1 g9760 g9760.t1 exon g9760.t1.exon1 5060185 5060212
chr_1 g9760 g9760.t1 cds g9760.t1.CDS1 5060185 5060212
chr_1 g9760 g9760.t1 exon g9760.t1.exon2 5060282 5061111
chr_1 g9760 g9760.t1 cds g9760.t1.CDS2 5060282 5061111
chr_1 g9760 g9760.t1 TSS g9760.t1 NA NA
chr_1 g9760 g9760.t1 TTS g9760.t1 NA NA

Sequences

>g9760.t1 Gene=g9760 Length=858
ATGTGTCGTAAATTAGTCTTGAGCTCAAAAGTTGAAGTGATTGTTAGTAAATCGAACATT
CTAACCGAAGAAGGATGCAAAAAATTAATTCAAGAAGCTACAAATTTTGGTCCAGTTGGA
GGAATTTTTAATTTTGCTGCAGTTTTGCGTACTAATTCTTTTGAAAATCACACAGTTGAA
GAATTTAATGAGTCACTCGCACTAAAAACTTTTGTTACAAAATATTTACATGAACTATCG
ATTAAATATTGTCCAAAATTGAAGTATTTTGTTGGATACTCGAGTATTATGTGCGGTCGA
GGATATCCAGGTCAAACAACTTATGGAATGGCAAATTCAATTATGGAAAGAATCATTGAA
GAACGAAATGAAATTCGATTGCCAGCAAAAGTAATTCAATGGGGACCAATTGGCGATGTC
GGTTTGCTCGCTGATATGGAATTAAATCGAAAAATGAAATTGAATTTTGAATTTCCAATG
CAACCACTTCGATCATTTTTAGAACAACATGATGTTCTTCTTCATCATCCTGAACCAATT
GTTGCTTGCACAGTTACTGTCAAGAAAAATTCAAAATCTGATGTTAAAAGAAGTTTCATT
GAAATGCTAATGGAAGTTTTAAATATCGATGATCGCAAATCAATTTCAATGAGTTCAACA
TTTTCGCAACTTGGAATTGATTCACTTGCTGGAATTGAAATGCAACAAATGATTAAGAAG
GAATATAATATCGAAGTTGCATTAACTGAATTAAGATCTTTAACAATTTCTGAGTTAGAA
GCAAAAATTAATGCAAATATAAATCAATCAAGTAAAAATTTTCAAGTCATTGAGGAAAAT
ATTTTGAAAAATAAATAA

>g9760.t1 Gene=g9760 Length=285
MCRKLVLSSKVEVIVSKSNILTEEGCKKLIQEATNFGPVGGIFNFAAVLRTNSFENHTVE
EFNESLALKTFVTKYLHELSIKYCPKLKYFVGYSSIMCGRGYPGQTTYGMANSIMERIIE
ERNEIRLPAKVIQWGPIGDVGLLADMELNRKMKLNFEFPMQPLRSFLEQHDVLLHHPEPI
VACTVTVKKNSKSDVKRSFIEMLMEVLNIDDRKSISMSSTFSQLGIDSLAGIEMQQMIKK
EYNIEVALTELRSLTISELEAKINANINQSSKNFQVIEENILKNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9760.t1 Gene3D G3DSA:3.40.50.720 - 6 185 0.000000
10 g9760.t1 Gene3D G3DSA:1.10.1200.10 - 190 275 0.000000
3 g9760.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 10 275 0.000000
4 g9760.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 10 275 0.000000
2 g9760.t1 Pfam PF08659 KR domain 9 138 0.000000
1 g9760.t1 Pfam PF00550 Phosphopantetheine attachment site 200 261 0.000000
11 g9760.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 193 270 12.451000
8 g9760.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1 140 0.000032
7 g9760.t1 SMART SM00823 Phosphopantetheine attachment site 196 254 0.009700
5 g9760.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 10 169 0.000000
6 g9760.t1 SUPERFAMILY SSF47336 ACP-like 193 264 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed