General information for g9763.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acidic mammalian chitinase.
Parent gene
- The parent gene g9763 is located on chr_1: 5091743..5092117 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9763 | g9763.t2 | isoform | g9763.t2 | 5091617 | 5092117 |
| chr_1 | g9763 | g9763.t2 | exon | g9763.t2.exon1 | 5091617 | 5092117 |
| chr_1 | g9763 | g9763.t2 | cds | g9763.t2.CDS1 | 5091617 | 5092117 |
| chr_1 | g9763 | g9763.t2 | TTS | g9763.t2 | 5092284 | 5092284 |
| chr_1 | g9763 | g9763.t2 | TSS | g9763.t2 | NA | NA |
Sequences
>g9763.t2 Gene=g9763 Length=501
ATGGAAAGTTTTCAGCTTGCTGTGCATGTATCAAAGTTGTTCTTATGTTCAACAGTTGCT
TCATATGTTGATTTAATAAATGTCATGACTTATGACATGCATGGTTCTTGGGATGGTTGT
ACTGGCATGAATGCCCCATTATATTCTGGATCAGGAAGTTCTTACACTAAATTTAGTGTC
GACGGTTCAATCAATTGGTGGCAGAGACAAGGAGCACCATCTTCTAAGTTAGTTGTTGGA
ATGGCAGCATTCGGCAGGAGCTTCACTCTTGCAAATCCATCAAACAATGGTGTAGGCGCA
ACAATAGTTGGTCCAGGAAATGGTGGTCCATTTTTAGATCAATCTGGAACCCTTGGTTAT
AATGAAATTTGTCATCTAATGAAATCAGGTGGATGGACAAGAGTTGGGAATCACAACAAA
AAGTTCCCTATGTATACAAACATAATCAATGGGTTGGCTATGATGACACTGAATCGATTC
AGCTCAAATTGCAATATGTAA
>g9763.t2 Gene=g9763 Length=166
MESFQLAVHVSKLFLCSTVASYVDLINVMTYDMHGSWDGCTGMNAPLYSGSGSSYTKFSV
DGSINWWQRQGAPSSKLVVGMAAFGRSFTLANPSNNGVGATIVGPGNGGPFLDQSGTLGY
NEICHLMKSGGWTRVGNHNKKFPMYTNIINGLAMMTLNRFSSNCNM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9763.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 9 | 137 | 3.3E-30 |
| 2 | g9763.t2 | PANTHER | PTHR11177:SF314 | - | 18 | 143 | 2.6E-36 |
| 3 | g9763.t2 | PANTHER | PTHR11177 | CHITINASE | 18 | 143 | 2.6E-36 |
| 1 | g9763.t2 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 17 | 145 | 5.6E-25 |
| 5 | g9763.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 17 | 92 | 7.21E-25 |
| 4 | g9763.t2 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 84 | 145 | 5.5E-16 |
| 6 | g9763.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
