Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9766 g9766.t1 isoform g9766.t1 5098973 5099469
chr_1 g9766 g9766.t1 exon g9766.t1.exon1 5098973 5099135
chr_1 g9766 g9766.t1 cds g9766.t1.CDS1 5098973 5099135
chr_1 g9766 g9766.t1 exon g9766.t1.exon2 5099210 5099469
chr_1 g9766 g9766.t1 cds g9766.t1.CDS2 5099210 5099469
chr_1 g9766 g9766.t1 TSS g9766.t1 NA NA
chr_1 g9766 g9766.t1 TTS g9766.t1 NA NA

Sequences

>g9766.t1 Gene=g9766 Length=423
ATGGTAGTTTTGAAGAATTTTCAATTTATTGCATTTGCAACAGGATATGATTTCACTTTT
CCATTTTTGTCAGTTGATTCTGGAATTTCAGTTTATGACAAATGTGTTCAACCACTTTAT
AAACAATGCATCAATGCTAATCGACCATCAATGGCCATTATTGGTAGAAAAAATCTACCA
TCAAGAGAAGAAATGCTGCAAGACATTCAAAAGATTTTAAAACTCGAAATATTACAGAAA
ATCTTCATAAAGCACATTACTTGGGATTTGCGAAACATGGATTGTATTTTGGATGATTTG
GCAAAAACTTCTGGAATTGAACCATTAAAGCAAGTTCTCGTTGATTTATCGACTCATCAA
GTACAACATGCATTTGAAAATTCAAAAACATTTCGATTTTACAATTACAAAGTTTTTGAA
TGA

>g9766.t1 Gene=g9766 Length=140
MVVLKNFQFIAFATGYDFTFPFLSVDSGISVYDKCVQPLYKQCINANRPSMAIIGRKNLP
SREEMLQDIQKILKLEILQKIFIKHITWDLRNMDCILDDLAKTSGIEPLKQVLVDLSTHQ
VQHAFENSKTFRFYNYKVFE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9766.t1 Gene3D G3DSA:3.50.50.60 - 1 140 0.0e+00
1 g9766.t1 Pfam PF00743 Flavin-binding monooxygenase-like 6 55 8.1e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0050661 NADP binding MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0004499 N,N-dimethylaniline monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed