Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dimethylaniline monooxygenase [N-oxide-forming] 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9773 g9773.t1 TSS g9773.t1 5112961 5112961
chr_1 g9773 g9773.t1 isoform g9773.t1 5113004 5113775
chr_1 g9773 g9773.t1 exon g9773.t1.exon1 5113004 5113649
chr_1 g9773 g9773.t1 cds g9773.t1.CDS1 5113004 5113649
chr_1 g9773 g9773.t1 exon g9773.t1.exon2 5113711 5113775
chr_1 g9773 g9773.t1 cds g9773.t1.CDS2 5113711 5113775
chr_1 g9773 g9773.t1 TTS g9773.t1 NA NA

Sequences

>g9773.t1 Gene=g9773 Length=711
ATGAAAGTTGCAGTGGTTGGTTGTGGTCCAAATGGTTTGTGTGCAATTAAAAATTGCATT
TCTGAGGGATTCGAAGTTGTTGCATTTGAACAAACTTCAGAAATTGGTGGAGAATGGAAT
TCAAATTTAGAAATTGGTCCAAATGTTCACTCAAAAATATATGAAGGCTTAATGACGAAT
TTGATCAAAGAAATTATGGAATTTAGTGACTTTTCTTATGATCAAAATATAACTGAATCA
TTTTTGACTGCTGATAAAGTTCAAAATTATTTTCTAAAATATACTGAGAAGTTTGACTTA
AGGAAACACATAAAATTCAATCATAAAGTCATCAATGTTCGACCAATTTCTGATGATCAA
TGGGAAATTATTATTAAAGATTTAGAGACTGACGAATACAAAACAATAACAAGTGATAAA
GTCTTTATTTGTATTGGAATTTCTGCTCCATGGATGCCAAAAATTGAAGGTCTAAATGAA
TTTCAAGGAAAAATAATTCATTCTCGTGATTTTCGCTCAACAAAAATGTTTGAAAATAAA
AAAGTCTTGCTCATCGGAAGTGGAGCAAGTTCACTTGATATGGTCATTGCTATTGATAAA
GTTGCAGAAAAAATTACATGGGTGAATAAAATTCAAGAAACTCATGGTTCACAAAAAGTG
GAGCAGAATTTGAAAATGGAAGTTTTGAAGAATTTGATATCATTGCTCTAG

>g9773.t1 Gene=g9773 Length=236
MKVAVVGCGPNGLCAIKNCISEGFEVVAFEQTSEIGGEWNSNLEIGPNVHSKIYEGLMTN
LIKEIMEFSDFSYDQNITESFLTADKVQNYFLKYTEKFDLRKHIKFNHKVINVRPISDDQ
WEIIIKDLETDEYKTITSDKVFICIGISAPWMPKIEGLNEFQGKIIHSRDFRSTKMFENK
KVLLIGSGASSLDMVIAIDKVAEKITWVNKIQETHGSQKVEQNLKMEVLKNLISLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g9773.t1 Coils Coil Coil 229 236 -
12 g9773.t1 Gene3D G3DSA:3.50.50.60 - 1 233 1.3E-47
2 g9773.t1 PANTHER PTHR23023 DIMETHYLANILINE MONOOXYGENASE 2 206 9.4E-54
3 g9773.t1 PANTHER PTHR23023:SF166 DIMETHYLANILINE MONOOXYGENASE [N-OXIDE-FORMING] 2 206 9.4E-54
10 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 1 17 4.1E-16
9 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 25 49 4.1E-16
6 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 79 94 4.1E-16
7 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 104 116 4.1E-16
4 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 120 136 4.1E-16
5 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 166 180 4.1E-16
8 g9773.t1 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 193 208 4.1E-16
1 g9773.t1 Pfam PF00743 Flavin-binding monooxygenase-like 2 206 1.1E-42
11 g9773.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1 209 1.12E-42

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0050661 NADP binding MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0004499 N,N-dimethylaniline monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed