General information for g9773.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dimethylaniline monooxygenase [N-oxide-forming] 2.
Parent gene
- The parent gene g9773 is located on chr_1: 5113004..5114317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9773 | g9773.t3 | TSS | g9773.t3 | 5112961 | 5112961 |
| chr_1 | g9773 | g9773.t3 | isoform | g9773.t3 | 5113004 | 5114012 |
| chr_1 | g9773 | g9773.t3 | exon | g9773.t3.exon1 | 5113004 | 5113843 |
| chr_1 | g9773 | g9773.t3 | cds | g9773.t3.CDS1 | 5113004 | 5113843 |
| chr_1 | g9773 | g9773.t3 | exon | g9773.t3.exon2 | 5113923 | 5114012 |
| chr_1 | g9773 | g9773.t3 | cds | g9773.t3.CDS2 | 5113923 | 5114012 |
| chr_1 | g9773 | g9773.t3 | TTS | g9773.t3 | NA | NA |
Sequences
>g9773.t3 Gene=g9773 Length=930
ATGAAAGTTGCAGTGGTTGGTTGTGGTCCAAATGGTTTGTGTGCAATTAAAAATTGCATT
TCTGAGGGATTCGAAGTTGTTGCATTTGAACAAACTTCAGAAATTGGTGGAGAATGGAAT
TCAAATTTAGAAATTGGTCCAAATGTTCACTCAAAAATATATGAAGGCTTAATGACGAAT
TTGATCAAAGAAATTATGGAATTTAGTGACTTTTCTTATGATCAAAATATAACTGAATCA
TTTTTGACTGCTGATAAAGTTCAAAATTATTTTCTAAAATATACTGAGAAGTTTGACTTA
AGGAAACACATAAAATTCAATCATAAAGTCATCAATGTTCGACCAATTTCTGATGATCAA
TGGGAAATTATTATTAAAGATTTAGAGACTGACGAATACAAAACAATAACAAGTGATAAA
GTCTTTATTTGTATTGGAATTTCTGCTCCATGGATGCCAAAAATTGAAGGTCTAAATGAA
TTTCAAGGAAAAATAATTCATTCTCGTGATTTTCGCTCAACAAAAATGTTTGAAAATAAA
AAAGTCTTGCTCATCGGAAGTGGAGCAAGTTCACTTGATATGGTCATTGCTATTGATAAA
GTTGCAGAAAAAATTACATGGGTGAATAAAATTCAAGAAACTCATGGTACGTCATTAAAA
CTTGAATTATCTCAGAGAACTGTTGAAAAAACAATTCTGATTAAAAGGTTCACAAAAAGT
GGAGCAGAATTTGAAAATGGAAGTTTTGAAGAATTTGATATCATTGCTCTAGCTACAGGA
TATGATTTCACTTTTCCATTTTTGTCAGTTGATTCTGGAATTGCTGTTTATGACAAATGT
CTATGCCAATGTTTGAGTTACAAATCAAATTCTGCCTTAAATACTGGTCAGACAGGAAAA
TTCTTCCTTCAAGAGAAGAAATGCTGCTAG
>g9773.t3 Gene=g9773 Length=309
MKVAVVGCGPNGLCAIKNCISEGFEVVAFEQTSEIGGEWNSNLEIGPNVHSKIYEGLMTN
LIKEIMEFSDFSYDQNITESFLTADKVQNYFLKYTEKFDLRKHIKFNHKVINVRPISDDQ
WEIIIKDLETDEYKTITSDKVFICIGISAPWMPKIEGLNEFQGKIIHSRDFRSTKMFENK
KVLLIGSGASSLDMVIAIDKVAEKITWVNKIQETHGTSLKLELSQRTVEKTILIKRFTKS
GAEFENGSFEEFDIIALATGYDFTFPFLSVDSGIAVYDKCLCQCLSYKSNSALNTGQTGK
FFLQEKKCC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9773.t3 | Gene3D | G3DSA:3.50.50.60 | - | 1 | 301 | 0e+00 |
| 4 | g9773.t3 | PANTHER | PTHR23023 | DIMETHYLANILINE MONOOXYGENASE | 2 | 209 | 0e+00 |
| 6 | g9773.t3 | PANTHER | PTHR23023:SF166 | DIMETHYLANILINE MONOOXYGENASE [N-OXIDE-FORMING] | 2 | 209 | 0e+00 |
| 3 | g9773.t3 | PANTHER | PTHR23023 | DIMETHYLANILINE MONOOXYGENASE | 226 | 269 | 0e+00 |
| 5 | g9773.t3 | PANTHER | PTHR23023:SF166 | DIMETHYLANILINE MONOOXYGENASE [N-OXIDE-FORMING] | 226 | 269 | 0e+00 |
| 18 | g9773.t3 | PIRSF | PIRSF000332 | FMO | 1 | 230 | 0e+00 |
| 17 | g9773.t3 | PIRSF | PIRSF000332 | FMO | 211 | 288 | 2e-07 |
| 12 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 1 | 17 | 0e+00 |
| 11 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 25 | 49 | 0e+00 |
| 9 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 79 | 94 | 0e+00 |
| 10 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 104 | 116 | 0e+00 |
| 7 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 120 | 136 | 0e+00 |
| 13 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 166 | 180 | 0e+00 |
| 14 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 193 | 208 | 0e+00 |
| 8 | g9773.t3 | PRINTS | PR00370 | Flavin-containing monooxygenase (FMO) signature | 245 | 272 | 0e+00 |
| 2 | g9773.t3 | Pfam | PF00743 | Flavin-binding monooxygenase-like | 2 | 206 | 0e+00 |
| 1 | g9773.t3 | Pfam | PF00743 | Flavin-binding monooxygenase-like | 233 | 269 | 2e-05 |
| 15 | g9773.t3 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 1 | 210 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050661 | NADP binding | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed