General information for g9781.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family B member 10, mitochondrial.
Parent gene
- The parent gene g9781 is located on chr_1: 5153263..5157956 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9781 | g9781.t1 | TSS | g9781.t1 | 5151055 | 5151055 |
| chr_1 | g9781 | g9781.t1 | isoform | g9781.t1 | 5151278 | 5153263 |
| chr_1 | g9781 | g9781.t1 | exon | g9781.t1.exon1 | 5151278 | 5151347 |
| chr_1 | g9781 | g9781.t1 | cds | g9781.t1.CDS1 | 5151278 | 5151347 |
| chr_1 | g9781 | g9781.t1 | exon | g9781.t1.exon2 | 5151404 | 5151610 |
| chr_1 | g9781 | g9781.t1 | cds | g9781.t1.CDS2 | 5151404 | 5151610 |
| chr_1 | g9781 | g9781.t1 | exon | g9781.t1.exon3 | 5151705 | 5152933 |
| chr_1 | g9781 | g9781.t1 | cds | g9781.t1.CDS3 | 5151705 | 5152933 |
| chr_1 | g9781 | g9781.t1 | exon | g9781.t1.exon4 | 5152988 | 5153263 |
| chr_1 | g9781 | g9781.t1 | cds | g9781.t1.CDS4 | 5152988 | 5153263 |
| chr_1 | g9781 | g9781.t1 | TTS | g9781.t1 | 5153359 | 5153359 |
Sequences
>g9781.t1 Gene=g9781 Length=1782
ATGAAATTTAAAAATTCTGATCTAAAGCGACTCTTGTCATTAGCTAAACCAGAAAAATGG
TCAATTGCAGGTGCAATCGGATGTCTGATAATTTCTTCTTCAATAACAATGGCTGTTCCA
TTCGGTTTAGGGAAGATCCTCGATGCAATATATTCAACTGACACAGATAGCAAGCAAGCT
AGAGAGAAACTCAATGAATTTTGTGCCATTCTTGCTGGCATTTTCATTATCGGAGGTGTT
GCAAATTTTGGCCGCGTCTACTTGTTTAATAACGCATCATTGAGAATCACAAAAAGATTA
CGAGAGTTACTCTATAAAAGAATAACTATGCAAGAATGTTCATGGTTTGATACAAAAGGT
ACTGGTGAATTAGTCAATCGTTTGTCTGCTGATACATCAATGGTCGGTAATTCTTTAAGT
CAAAATCTTTCCGATGGCTTAAGATCAACTGCAATGGTTTTGGCTGGGACAGGAATGATG
ATTTATACATCACCTAGTTTAGCTTTAGTTGGTGCCGGAGTTGTTCCTTGTGTAGCCGGA
ATGGCTGTTGTTTATGGCCGATATTTAAGAAACATCACAAGACAAATGATGGATAAACTC
GCTGATGTAATGAAAGTTGGTGAAGAACGAATGGGAAATATCAAAACTGTAAAAATTTTC
AGCAAAGAAAGGCGCGAAAATGAAATTCTCTCAAAGGAGCTTGAAGATGCACTACAAATT
GGATATCGAGAGTCAAAAGCACGTGCAATATTTTATGGAATGACAGGATTATCTGGAAAT
ATTATAATTATGTCTGTTTTGTACTATGGTGGAATTTTAGTTAATGATGGATCACTTTCA
ATTGGTTCTTTGACATCATTTATTTTATATGCAGCTTATACAGCAATTTCAATTGGTGGT
TTGAGTAATTTTTATACAGAACTCAATAAAGGAATTGGAAGTGCAACTCGAATCTGGGAA
ATTATGGATAGACAGCCACTAATACCAATTGAAGGTGGTTTAATTCCGTCACTAAAACCA
AGAGGTGAAATTTCATTTAGAAATGTTTCTTTCAATTATCCATCTCGACCTGATGCAACT
GTCATCAAAAATATGGACATGAATGTTCAAGCTGGACAAATTACAGCAATTGTTGGACGA
TCTGGCAGTGGAAAATCTTCAATAGCTTCACTTTTAATGAGACTTTATGATCCACAAAAT
GGTGACATTTTTCTTGATGGTCATAATTTAAGAACTCTTGATCCATCATGGCTTAGAAAG
CATATTGGAGCTGTGAATCAAGAACCTGTACTCTTTAGTGGTTCAATCAGAGACAATATT
CTTTATGGCCTTGATGAAAATGAGAAAATTAGTGAAGTAGATTTCCAAAGAGTTATCGAA
GAAGCTCATGTTATTGAATTTGCTAGACAATTGCCAGATGGATTAAATACACTTGTTGGG
CAAAGAGGAATTATGTTGAGTGGTGGACAAAAACAGCGTGTCGCAATTGCCAGAGCTTTA
ATTAAGAATCCTGAAATACTCATACTTGATGAAGCAACAAGTGCTCTCGATGCAGTTTCC
GAAGAATTGATTCAAAAAGCACTTGAAAATTTGACAAAAGGACGAACTGTGTTGACCATA
GCTCATAGATTGAGTACGATTAAAAATGCTCAAAATATTTGCGTCTTGCAAGATGGGCGA
ATAATCGAACAAGGAAATTATCGTGAATTAATGAATCTACCTCAAGGAGCATTTAAAGAA
CTCGTACAGCATCAAACTTTTAAAACCTCAGATGAAAGTTGA
>g9781.t1 Gene=g9781 Length=593
MKFKNSDLKRLLSLAKPEKWSIAGAIGCLIISSSITMAVPFGLGKILDAIYSTDTDSKQA
REKLNEFCAILAGIFIIGGVANFGRVYLFNNASLRITKRLRELLYKRITMQECSWFDTKG
TGELVNRLSADTSMVGNSLSQNLSDGLRSTAMVLAGTGMMIYTSPSLALVGAGVVPCVAG
MAVVYGRYLRNITRQMMDKLADVMKVGEERMGNIKTVKIFSKERRENEILSKELEDALQI
GYRESKARAIFYGMTGLSGNIIIMSVLYYGGILVNDGSLSIGSLTSFILYAAYTAISIGG
LSNFYTELNKGIGSATRIWEIMDRQPLIPIEGGLIPSLKPRGEISFRNVSFNYPSRPDAT
VIKNMDMNVQAGQITAIVGRSGSGKSSIASLLMRLYDPQNGDIFLDGHNLRTLDPSWLRK
HIGAVNQEPVLFSGSIRDNILYGLDENEKISEVDFQRVIEEAHVIEFARQLPDGLNTLVG
QRGIMLSGGQKQRVAIARALIKNPEILILDEATSALDAVSEELIQKALENLTKGRTVLTI
AHRLSTIKNAQNICVLQDGRIIEQGNYRELMNLPQGAFKELVQHQTFKTSDES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g9781.t1 | CDD | cd18573 | ABC_6TM_ABCB10_like | 25 | 318 | 4.66966E-147 |
| 21 | g9781.t1 | CDD | cd03249 | ABC_MTABC3_MDL1_MDL2 | 344 | 585 | 1.34467E-122 |
| 8 | g9781.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 4 | 336 | 4.4E-107 |
| 7 | g9781.t1 | Gene3D | G3DSA:3.40.50.300 | - | 337 | 592 | 8.5E-94 |
| 3 | g9781.t1 | PANTHER | PTHR24221 | ATP-BINDING CASSETTE SUB-FAMILY B | 3 | 587 | 2.1E-283 |
| 4 | g9781.t1 | PANTHER | PTHR24221:SF553 | LD18126P | 3 | 587 | 2.1E-283 |
| 20 | g9781.t1 | PIRSF | PIRSF002773 | ABC_prm/ATPase_B | 2 | 593 | 1.5E-231 |
| 1 | g9781.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 25 | 293 | 5.8E-66 |
| 2 | g9781.t1 | Pfam | PF00005 | ABC transporter | 363 | 514 | 4.1E-36 |
| 12 | g9781.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 17 | g9781.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 43 | - |
| 11 | g9781.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 44 | 63 | - |
| 16 | g9781.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 84 | - |
| 14 | g9781.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 85 | 166 | - |
| 15 | g9781.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 9 | g9781.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 190 | 248 | - |
| 19 | g9781.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 249 | 269 | - |
| 13 | g9781.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 270 | 280 | - |
| 18 | g9781.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 301 | - |
| 10 | g9781.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 302 | 593 | - |
| 29 | g9781.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 486 | 500 | - |
| 30 | g9781.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 23 | 310 | 53.188 |
| 31 | g9781.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 344 | 583 | 25.09 |
| 28 | g9781.t1 | SMART | SM00382 | AAA_5 | 371 | 566 | 4.8E-16 |
| 5 | g9781.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 7 | 331 | 1.7E-76 |
| 6 | g9781.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 335 | 585 | 2.02E-86 |
| 25 | g9781.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
| 24 | g9781.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 89 | - |
| 23 | g9781.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 27 | g9781.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 272 | - |
| 26 | g9781.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 304 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05657 (ATP-binding cassette, subfamily B (MDR/TAP), member 10)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
