General information for g9781.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9781 is located on chr_1: 5153263..5157956 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9781 | g9781.t23 | isoform | g9781.t23 | 5153263 | 5156418 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon1 | 5153263 | 5153980 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon2 | 5154067 | 5154470 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon3 | 5154537 | 5154608 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon4 | 5154679 | 5155004 |
| chr_1 | g9781 | g9781.t23 | cds | g9781.t23.CDS1 | 5154829 | 5155004 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon5 | 5155179 | 5155375 |
| chr_1 | g9781 | g9781.t23 | cds | g9781.t23.CDS2 | 5155179 | 5155362 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon6 | 5155888 | 5156100 |
| chr_1 | g9781 | g9781.t23 | exon | g9781.t23.exon7 | 5156163 | 5156418 |
| chr_1 | g9781 | g9781.t23 | TSS | g9781.t23 | NA | NA |
| chr_1 | g9781 | g9781.t23 | TTS | g9781.t23 | NA | NA |
Sequences
>g9781.t23 Gene=g9781 Length=2186
ATTCTAGTGATTTTTATAGCTAAAGACAAAAAAGTGATGACAAATTTTATATAAAATAAA
TTCCTAATTGTGTTCTTATAGCCGAAATAAAAGCACATAAATAAATACATATATGAAGTA
TATTTTTATTTCTCTTTTAAAATTTTTGTAAATACAAGAACACATGAGTTATTTTTGTCT
TAAAATTTTCTTAACACTGGTAATGAATTCATGTAGTTTTATGAAAACAAGTTTTGTTTT
TTTTTCTCTAAAGTCAAATAATCATGAATGAAGTCAACAAGTCTACATATGAAAAACAAC
TTCATTGCCTGAGGATATTACTGAAAATTTATTATGTTTACTTCCACCAAATGCAGTTTC
TTTTTTTGAATTTAATGTTGATCACGTTAAAAATATCACTTAAAGCTAATTTTAATAAAT
TTAAATTTAGGATTTTTTAGCATAAGCTGCTTTCAAATCTTTTCTCATGATTTTTCCAGT
CGCATTTTTAGGGATAGCTTGCATGAATTCAACACCTCCGTCTAATCTTTTATATTCAGC
AACTTTTTCTGCCACAAATTGTTGAACATCGCTTTCATTCAAGTTTGGATTTTTTGACAC
AATATAAGCACGAGGCAATTCACCACTAATTTTATCAGGAATTCCAATTACAGCAGCATC
AAGAATATCTGGGTGAGTTCTTAGGACTTCTTCAAGTTCAGCGGGTGGGACTTGGAATCC
TTTTACTTTAATCAACTCTTTCAAGCGATCTGTGATATAAAATTCTCTGTTTTCATCATA
ATAAGCAATATCACCAGTCCTTAACCAGCCATCATCAGTGATTGTCTCTTTTGTTGCCTT
TTCATTGTTCAAATATCCCAACATAATTTGTGGTCCACGTACTAATAGTTCTCCACTTTC
ATTTGGTCCAACTCCTCGAAATTCTGGATCATCTAATCTCACAATTTTTGCTTCTGTATC
AGAAGAAGGAAAACCAACACTGCCGAAATTCTTTGAACCAATTGGAGACATAAGAACAAC
TGGTGAAGCTTCTGTTAGACCATAGCCTTGGAAAAATTGTGCATTCGGCGCCTTTTTCAA
AAACTGTTCAGCGTCGTTTTTTCCCAATGGAGCTTTATATATCACCCGACATGACATATT
TAATGCTCTCCATGTGTTTCGGTGAAACTTTATCGAAATGAGTTAAAAATAGAATAATTG
GTGGTACGAGATATAAAACTGAAGCTGGATGATTTGCAAGTGCATTCAAATATAACTCGG
GAGTAAATTTAGGCAATGCAATTATTTTACAACCGTGTGATAATTTGCTGAGTAATGTGC
ATGTGAGTCCATAGATATGGAAAAATGGCAAAACACATGGCAGAACATCTTGATGATCAC
CTACAGCTGGCGTTGAAATTGCACCATTACCGGTATCAATATTTATCATCATTCCATTTG
AAACAAGATTTCTATGAGATAATGCAACACCTTTTGACAAACCTGTTGTGCCGCTGTTAT
AATAAATTTTTTATTAGATTTCATTTACCTCTTGAGTCGATCAGTTCGCAAAAATCTATT
CCATTTGCTGGAATTTTAGCGTCCGGTGTTTCCTTAACGTATACAATTTTTATTGGTTTT
TTAGTCATTTCAACAGATTTCTTCAAAATTGGGCTCATGCATGCCAAACCAAATAAAATT
GTTGCATTGCTATCGAGAAGTTGACGTGAAATTTCATGTGGCGTGTAGATTGGATTTACA
GTTGTCACTGTCACACTTGCTTCACTTCCAGCAAGCACAATAATTGGGAATTCAATGCTG
TTAGGCAGACAAACAGCAATCGTGTCACCAAACTTTAAATTAAAATTTTTTTGCAAACGA
ATTGCAAGCGTACGACTTTGATCACGCAATTGTCCATATGTCACAGAACGTTCACTTGCT
CCGTCAACCTAATGCTGTCTTATGACTCCATTTATTAACATCAGCCCAAACATATTGATC
AATTGTACAATTTGGGTAATTTAATGAAGGATATGGTGAATAAACAATAACATCTTCCTT
ATTATTTGCCAGTGGCTGTTGATAGAAAGAATCCTTTGATGTCAAAATAGCTCTTACAAG
TTGCTTTTGACTCAATCGACTTCCGCCAAATAATACATTTTTCACTGCACGACCAAGCAT
CTTTTCACTTCAACAATCTAAACCTG
>g9781.t23 Gene=g9781 Length=119
MAKHMAEHLDDHLQLALKLHHYRYQYLSSFHLKQDFYEIMQHLLTNLLCRCYNKFFIRFH
LPLESISSQKSIPFAGILASGVSLTYTIFIGFLVISTDFFKIGLMHAKPNKIVALLSRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g9781.t23 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 71 | - |
| 4 | g9781.t23 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 95 | - |
| 2 | g9781.t23 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 96 | 119 | - |
| 1 | g9781.t23 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
