General information for g9781.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9781 is located on chr_1: 5153263..5157956 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9781 | g9781.t28 | isoform | g9781.t28 | 5153263 | 5157956 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon1 | 5153263 | 5153986 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon2 | 5154075 | 5154470 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon3 | 5154537 | 5154605 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon4 | 5154679 | 5155004 |
| chr_1 | g9781 | g9781.t28 | cds | g9781.t28.CDS1 | 5154829 | 5155004 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon5 | 5155179 | 5155375 |
| chr_1 | g9781 | g9781.t28 | cds | g9781.t28.CDS2 | 5155179 | 5155362 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon6 | 5155888 | 5156100 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon7 | 5156163 | 5156413 |
| chr_1 | g9781 | g9781.t28 | exon | g9781.t28.exon8 | 5157874 | 5157956 |
| chr_1 | g9781 | g9781.t28 | TSS | g9781.t28 | NA | NA |
| chr_1 | g9781 | g9781.t28 | TTS | g9781.t28 | NA | NA |
Sequences
>g9781.t28 Gene=g9781 Length=2259
ATTCTAGTGATTTTTATAGCTAAAGACAAAAAAGTGATGACAAATTTTATATAAAATAAA
TTCCTAATTGTGTTCTTATAGCCGAAATAAAAGCACATAAATAAATACATATATGAAGTA
TATTTTTATTTCTCTTTTAAAATTTTTGTAAATACAAGAACACATGAGTTATTTTTGTCT
TAAAATTTTCTTAACACTGGTAATGAATTCATGTAGTTTTATGAAAACAAGTTTTGTTTT
TTTTTCTCTAAAGTCAAATAATCATGAATGAAGTCAACAAGTCTACATATGAAAAACAAC
TTCATTGCCTGAGGATATTACTGAAAATTTATTATGTTTACTTCCACCAAATGCAGTTTC
TTTTTTTGAATTTAATGTTGATCACGTTAAAAATATCACTTAAAGCTAATTTTAATAAAT
TTAAATTTAGGATTTTTTAGCATAAGCTGCTTTCAAATCTTTTCTCATGATTTTTCCAGT
CGCATTTTTAGGGATAGCTTGCATGAATTCAACACCTCCGTCTAATCTTTTATATTCAGC
AACTTTTTCTGCCACAAATTGTTGAACATCGCTTTCATTCAAGTTTGGATTTTTTGACAC
AATATAAGCACGAGGCAATTCACCACTAATTTTATCAGGAATTCCAATTACAGCAGCATC
AAGAATATCTGGGTGAGTTCTTAGGACTTCTTCAAGTTCAGCGGGTGGGACTTGGAATCC
TTTTTTTAATCAACTCTTTCAAGCGATCTGTGATATAAAATTCTCTGTTTTCATCATAAT
AAGCAATATCACCAGTCCTTAACCAGCCATCATCAGTGATTGTCTCTTTTGTTGCCTTTT
CATTGTTCAAATATCCCAACATAATTTGTGGTCCACGTACTAATAGTTCTCCACTTTCAT
TTGGTCCAACTCCTCGAAATTCTGGATCATCTAATCTCACAATTTTTGCTTCTGTATCAG
AAGAAGGAAAACCAACACTGCCGAAATTCTTTGAACCAATTGGAGACATAAGAACAACTG
GTGAAGCTTCTGTTAGACCATAGCCTTGGAAAAATTGTGCATTCGGCGCCTTTTTCAAAA
ACTGTTCAGCGTCGTTTTTTCCCAATGGAGCTTTATATATCACCCGACATGACATATTTA
ATGCTCTCCATGTGTTTCGGTGAAACTTTATCGAAATGAGTTAAAAATATAATTGGTGGT
ACGAGATATAAAACTGAAGCTGGATGATTTGCAAGTGCATTCAAATATAACTCGGGAGTA
AATTTAGGCAATGCAATTATTTTACAACCGTGTGATAATTTGCTGAGTAATGTGCATGTG
AGTCCATAGATATGGAAAAATGGCAAAACACATGGCAGAACATCTTGATGATCACCTACA
GCTGGCGTTGAAATTGCACCATTACCGGTATCAATATTTATCATCATTCCATTTGAAACA
AGATTTCTATGAGATAATGCAACACCTTTTGACAAACCTGTTGTGCCGCTGTTATAATAA
ATTTTTTATTAGATTTCATTTACCTCTTGAGTCGATCAGTTCGCAAAAATCTATTCCATT
TGCTGGAATTTTAGCGTCCGGTGTTTCCTTAACGTATACAATTTTTATTGGTTTTTTAGT
CATTTCAACAGATTTCTTCAAAATTGGGCTCATGCATGCCAAACCAAATAAAATTGTTGC
ATTGCTATCGAGAAGTTGACGTGAAATTTCATGTGGCGTGTAGATTGGATTTACAGTTGT
CACTGTCACACTTGCTTCACTTCCAGCAAGCACAATAATTGGGAATTCAATGCTGTTAGG
CAGACAAACAGCAATCGTGTCACCAAACTTTAAATTAAAATTTTTTTGCAAACGAATTGC
AAGCGTACGACTTTGATCACGCAATTGTCCATATGTCACAGAACGTTCACTTGCTCCGTC
AACCTAATGCTGTCTTATGACTCCATTTATTAACATCAGCCCAAACATATTGATCAATTG
TACAATTTGGGTAATTTAATGAAGGATATGGTGAATAAACAATAACATCTTCCTTATTAT
TTGCCAGTGGCTGTTGATAGAAAGAATCCTTTGATGTCAAAATAGCTCTTACAAGTTGCT
TTTGACTCAATCGACTTCCGCCAAATAATACATTTTTCACTGCACGACCAAGCATCTTTT
CACTTCAACAATCTAAACTTTCTTTTTACTTGTATTTAAATTGATACCAACAAAAAATTC
TTATGATGATCTATAAGGTTTGACAGTCTAAACAGAACT
>g9781.t28 Gene=g9781 Length=119
MAKHMAEHLDDHLQLALKLHHYRYQYLSSFHLKQDFYEIMQHLLTNLLCRCYNKFFIRFH
LPLESISSQKSIPFAGILASGVSLTYTIFIGFLVISTDFFKIGLMHAKPNKIVALLSRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g9781.t28 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 71 | - |
| 4 | g9781.t28 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 95 | - |
| 2 | g9781.t28 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 96 | 119 | - |
| 1 | g9781.t28 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed