Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9786 g9786.t2 TTS g9786.t2 5202406 5202406
chr_1 g9786 g9786.t2 isoform g9786.t2 5202444 5204276
chr_1 g9786 g9786.t2 exon g9786.t2.exon1 5202444 5203102
chr_1 g9786 g9786.t2 cds g9786.t2.CDS1 5202444 5202956
chr_1 g9786 g9786.t2 exon g9786.t2.exon2 5204080 5204276
chr_1 g9786 g9786.t2 TSS g9786.t2 5204305 5204305

Sequences

>g9786.t2 Gene=g9786 Length=856
ATGTTCAAGCAATTTAAATTCTTAATATTTCTCACGACACTTAAGTTTGCGTACTTGACC
GATGACCATCAATCGAAAAATGTTATCATAATCGTTGCAGATGATTTAGGATTTCATGAT
TTGAGTTTTAGAGGAAGTAATGAAATTCCTTCGTATAATATTGATGCTTTGGCTTACAAC
GGCATAATTCTTGATCGATGCTTTAATTTATAGTCCATCTTTACCATCTGGTGTTCTTAG
AACTCAATATTTTCATATTTCTGACTTACTGCCAACATTGTTGACACTTGCAGAAACGAA
TATTAAAGTTAAGGATAAAATCGATGGAATTGATTTATCGAGAATGATTATGAATGACAT
GCCACCATATAGAGATGAAATTGTAACAGTTGATGATGTTTCTGGTTATGGTTCTTATAT
TTATAGCATTTTTAAACTTGTAAATGGTTCATCTTCTAATGGTCGAGCAGATGGTTGGAT
TGGTTCAAATAATAATAGTGATGTTAATAAAGATGATTACATTACTGGCGTTCTTAACTC
AGACGTAGCACAAATTTTGAAAAATTATGAAAATCCACTCATACCTGAAGAGATTTTAGA
AATACGTGAAAATGCAACAGTAAAATGCAGTGGAATAATAAGCGATTGTGATTTGCTTCG
AGGTCCATGTTTATTCGACATTTCTCGAGATCCTTGCGAAGAAAAAAATTTAGAACCAAC
TAATCCATTACTTTTTGATGCAATGTTAAAACTTTACCATTCATCTTTAAAAAAGCTTGT
ACCATCACATAAAAAACCATTAGATCCACAATGTGATCCTGCTAATTTCAATTTTACTTG
GAAATGGTGGGAGTGA

>g9786.t2 Gene=g9786 Length=170
MIMNDMPPYRDEIVTVDDVSGYGSYIYSIFKLVNGSSSNGRADGWIGSNNNSDVNKDDYI
TGVLNSDVAQILKNYENPLIPEEILEIRENATVKCSGIISDCDLLRGPCLFDISRDPCEE
KNLEPTNPLLFDAMLKLYHSSLKKLVPSHKKPLDPQCDPANFNFTWKWWE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g9786.t2 PANTHER PTHR10342 ARYLSULFATASE 12 170 0e+00
g9786.t2 PANTHER PTHR10342:SF264 MIP05773P 12 170 0e+00
g9786.t2 SUPERFAMILY SSF53649 Alkaline phosphatase-like 103 169 4e-07

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed