General information for g9790.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GPI mannosyltransferase 2.
Parent gene
- The parent gene g9790 is located on chr_1: 5214080..5215646 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9790 | g9790.t1 | TTS | g9790.t1 | 5213995 | 5213995 |
| chr_1 | g9790 | g9790.t1 | isoform | g9790.t1 | 5214080 | 5215498 |
| chr_1 | g9790 | g9790.t1 | exon | g9790.t1.exon1 | 5214080 | 5215498 |
| chr_1 | g9790 | g9790.t1 | cds | g9790.t1.CDS1 | 5214080 | 5215498 |
| chr_1 | g9790 | g9790.t1 | TSS | g9790.t1 | 5215781 | 5215781 |
Sequences
>g9790.t1 Gene=g9790 Length=1419
ATGCCAACAAATATTACAAAACTAGCAATCTTTAGTCGTTTATTTGTGATTTTTCTGCAA
TGCGTATCTAATCATTTAATTGAAGACCACAATGCAGACGATGTTTTTAGAGCGCCTATT
GATACCGCAGTGCGAAAGAAAAAATGTGATACAATTGTTGAATTCTTGCTTGGTGGATTT
CGTCGATGGGATGCACAATATTTCTTACATATATCAGAGCATGGATATACATATGAAAAT
ACTTTAGCGTTTTATCCTTTATATCCACTGTCTATCAAAATGATACGCTATGTTTTCATC
AATATTACACCATTTCTCACAGTTCGATCATTGTCTTTGCTCATTGGAGTCGTCCTTAAT
GTGATATTTTTCGTCAAAGCAACAAACTCACTTTATGAGTTAGCAAAGAAAGTCTTGAAA
GATCAAAGAAAAGCTGAAGTGGCTGCCATTCTTTTTTGCTTCAATCCTGCCTCAATTTTC
TTCACTGCACCATATTCAGAAAGTCTTTATAGTTGGCTGAGTTTTTCATTAATGCTAAAA
TGTTTTGACGATATCAATTCCGTGCTGATAGTTGTTCCATTAAGCTGCAGCATTCTAACA
CGATCAAATGGTTTAATTAATATAGGATTTGTAGTATATTATGGACTTAAGAAAATGTTT
AATCAAAACACTGTTCTATCATTTGTGACAGTGTTTTTAAAAATCTTTTCCATACTCATC
ATTATCGCATTTCATTTTGGATTAATGCAGGTCTACAATTATTATCTCTTTTGCTTCCAA
AAGTCATTCAATTTTCCTGATTTTATAAAAGATTTTGCATTAGAAAACGACCTTGTGCTT
GCAGGCAATCGATCAAGCACTTCAAATGAATCCGTGTCACCATGGTGCTTAAGTAATTTT
CCAGTTGCATATTCGTACATTCAAGAGCATTATTGGAATGTTGGCTATATGAATTACTAT
GAATTCAAACAAATTCCAAATTTTCTATTAGCTGCTCCAATAGTTTTAATAATCCTAGTC
AATGCATTTATTTATTTCATCAACAATCAAGATTATTGTTGGAGATTAGGAATTTTTAAT
TTGAGGCAATCAATTTTAAGAAAAACCTCAATAGCAGATCAAAATCAATTTGTATTTATC
GTTCATGCTGTGGCCATGTGTTTATTTTGTATTTTCTTCATACATGTTCAAGTGACTACT
CGGATCTTGGCATCTTCAAATCCAATGCTCTATTTCTTTTGTGCAAATTATTTCATGCCA
GAATCAGGTGCTCATAAGAAAAATGATGATAAAATTAATGAAGTACATGTTTTTGATATA
AAGAAATTAAATTGGACACAACGATTTATTGTTTATTATTTCATTGGCTACTATTCTCTT
GGAACTGTTTTATTTAGTAACTTCTTTCCATGGACTTAA
>g9790.t1 Gene=g9790 Length=472
MPTNITKLAIFSRLFVIFLQCVSNHLIEDHNADDVFRAPIDTAVRKKKCDTIVEFLLGGF
RRWDAQYFLHISEHGYTYENTLAFYPLYPLSIKMIRYVFINITPFLTVRSLSLLIGVVLN
VIFFVKATNSLYELAKKVLKDQRKAEVAAILFCFNPASIFFTAPYSESLYSWLSFSLMLK
CFDDINSVLIVVPLSCSILTRSNGLINIGFVVYYGLKKMFNQNTVLSFVTVFLKIFSILI
IIAFHFGLMQVYNYYLFCFQKSFNFPDFIKDFALENDLVLAGNRSSTSNESVSPWCLSNF
PVAYSYIQEHYWNVGYMNYYEFKQIPNFLLAAPIVLIILVNAFIYFINNQDYCWRLGIFN
LRQSILRKTSIADQNQFVFIVHAVAMCLFCIFFIHVQVTTRILASSNPMLYFFCANYFMP
ESGAHKKNDDKINEVHVFDIKKLNWTQRFIVYYFIGYYSLGTVLFSNFFPWT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9790.t1 | PANTHER | PTHR12468 | GPI MANNOSYLTRANSFERASE 2 | 4 | 472 | 1.8E-116 |
| 1 | g9790.t1 | Pfam | PF04188 | Mannosyltransferase (PIG-V) | 4 | 472 | 5.4E-90 |
| 20 | g9790.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 21 | g9790.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 22 | g9790.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 19 | - |
| 31 | g9790.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 23 | - |
| 18 | g9790.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 96 | - |
| 24 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 125 | - |
| 12 | g9790.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 126 | 144 | - |
| 28 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 145 | 165 | - |
| 17 | g9790.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 166 | 184 | - |
| 25 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 213 | - |
| 11 | g9790.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 214 | 224 | - |
| 29 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 225 | 246 | - |
| 19 | g9790.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 247 | 327 | - |
| 30 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 328 | 347 | - |
| 14 | g9790.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 348 | 376 | - |
| 23 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 377 | 396 | - |
| 16 | g9790.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 397 | 401 | - |
| 27 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 402 | 419 | - |
| 13 | g9790.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 420 | 449 | - |
| 26 | g9790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 450 | 469 | - |
| 15 | g9790.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 470 | 472 | - |
| 10 | g9790.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 6 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 127 | - |
| 9 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 148 | 170 | - |
| 5 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 212 | - |
| 4 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 225 | 247 | - |
| 3 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 347 | - |
| 7 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 377 | 399 | - |
| 8 | g9790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 449 | 471 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
| GO:0000009 | alpha-1,6-mannosyltransferase activity | MF |
| GO:0004376 | glycolipid mannosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K07542 (GPI mannosyltransferase 2 [EC:2.4.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
