General information for g9795.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Polypeptide N-acetylgalactosaminyltransferase 35A.
Parent gene
- The parent gene g9795 is located on chr_1: 5228279..5230259 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9795 | g9795.t2 | TTS | g9795.t2 | 5228216 | 5228216 |
| chr_1 | g9795 | g9795.t2 | isoform | g9795.t2 | 5228279 | 5229073 |
| chr_1 | g9795 | g9795.t2 | exon | g9795.t2.exon1 | 5228279 | 5228410 |
| chr_1 | g9795 | g9795.t2 | cds | g9795.t2.CDS1 | 5228279 | 5228410 |
| chr_1 | g9795 | g9795.t2 | exon | g9795.t2.exon2 | 5228469 | 5229073 |
| chr_1 | g9795 | g9795.t2 | cds | g9795.t2.CDS2 | 5228469 | 5228996 |
| chr_1 | g9795 | g9795.t2 | TSS | g9795.t2 | NA | NA |
Sequences
>g9795.t2 Gene=g9795 Length=737
AAATTATTCCATGCTCAAGAGTTGGTCATGTTTTTCGAAAGAGAAGACCTTATGGCTCAG
TTGGTTCTGATGATACAATGATTAAAAATTCATTACGTTTAGCTCATACTTGGATGGATG
AATATGTAAAATATTTTTTAGAAAATCAACCAACAGCAAGAGGTAAAGAATATGGTGACA
TAAGTGAGAGACTTGCATTACGTGAAAAACTTCAATGTAAATCATTCAAATGGTATTTAG
AAAATGTTTATCCCGAACAAGCATTGCCAGGTGAAAAGAGCAAACAAGAACTTCCACAAT
TTCAACCATGGCAGAAAAGAAAAAGAAATTATATAAAAACTTACATGTTGAGATTAAGTA
ACACAACTCTCTGTGCAACAATTGAAGGATTGGCAAAAGATAAAAATTCTTGGAGAAAAG
GTAGCAGAGTTGAATTGGCACAATGTTTAAGAGTTAAAAGTCAAATGTGGTATGAAACTG
AAAAAAGTGAACTTGTATTTGGTCAATTACTTTGTTTAGAAGCTCAAGGATCATCATTAT
CACAACCACTATTAAATAAATGTCATGAAATGGGCGGTGATCAACAATGGCATCATAGAC
AAGCGAAAGAATCTCCAATTTATAATGTAGCGACGGGCACTTGTCTTTCAGCACTAAAAG
CAGAAAAAGGTGCAATTTTGCAGCTAGCAATTTGTGAAAATTCTCCATTAGTTACATGGG
ATTTAGTGCAAATTTAA
>g9795.t2 Gene=g9795 Length=219
MIKNSLRLAHTWMDEYVKYFLENQPTARGKEYGDISERLALREKLQCKSFKWYLENVYPE
QALPGEKSKQELPQFQPWQKRKRNYIKTYMLRLSNTTLCATIEGLAKDKNSWRKGSRVEL
AQCLRVKSQMWYETEKSELVFGQLLCLEAQGSSLSQPLLNKCHEMGGDQQWHHRQAKESP
IYNVATGTCLSALKAEKGAILQLAICENSPLVTWDLVQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g9795.t2 | CDD | cd00161 | RICIN | 108 | 216 | 0.000e+00 |
| 8 | g9795.t2 | Gene3D | G3DSA:1.10.8.460 | - | 1 | 64 | 0.000e+00 |
| 7 | g9795.t2 | Gene3D | G3DSA:2.80.10.50 | - | 82 | 219 | 0.000e+00 |
| 2 | g9795.t2 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 217 | 0.000e+00 |
| 3 | g9795.t2 | PANTHER | PTHR11675:SF63 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 217 | 0.000e+00 |
| 1 | g9795.t2 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 90 | 208 | 0.000e+00 |
| 9 | g9795.t2 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 145 | 219 | 1.159e+01 |
| 6 | g9795.t2 | SMART | SM00458 | ricin_3 | 87 | 217 | 0.000e+00 |
| 5 | g9795.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 2 | 60 | 6.700e-06 |
| 4 | g9795.t2 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 84 | 216 | 0.000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
