General information for g9799.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GATOR complex protein NPRL3.
Parent gene
- The parent gene g9799 is located on chr_1: 5243457..5245193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9799 | g9799.t4 | TTS | g9799.t4 | 5243235 | 5243235 |
| chr_1 | g9799 | g9799.t4 | isoform | g9799.t4 | 5243457 | 5244473 |
| chr_1 | g9799 | g9799.t4 | exon | g9799.t4.exon1 | 5243457 | 5243527 |
| chr_1 | g9799 | g9799.t4 | cds | g9799.t4.CDS1 | 5243504 | 5243527 |
| chr_1 | g9799 | g9799.t4 | exon | g9799.t4.exon2 | 5243583 | 5244473 |
| chr_1 | g9799 | g9799.t4 | cds | g9799.t4.CDS2 | 5243583 | 5244305 |
| chr_1 | g9799 | g9799.t4 | TSS | g9799.t4 | 5245253 | 5245253 |
Sequences
>g9799.t4 Gene=g9799 Length=962
TTTATTGATCCAGATGTTATCGATCGAGCTATAATTTCTCTAAAACCTTATCATGGTTTT
CTTCTACTTGTCGATCCATCAGAATTACTTGATTGTGTGCCACCATCTGGTGCTAAAGTT
TTATTGCAACTCATTGAAAGTTACAATCCATTGAAAAGTTTACAAAGTATGAGCAACGAT
TCTGATTTGTCTTTAGATCAAGTTTTTCAAATGGTAGGACATTTAGTTTATTGGGCAAAA
GCGACCATAATTTATCCATTGTGTGAAACAAATGTTTATGTTATAAGTCCTGATGCACCG
ATTCATGTTAATTCACCATTAGTGGAAAAATTTGCAAATAAATTTCCTGGAATGTCGTTA
ATTGAAGTAATTAGCGATTTTAGTCTACCAACATCGATTGGACATCTCACTACACCACTC
CAACATCCAGCAAGACAAGGAAGATTAGCACAAATGGTATTGTGGATGCTTCAACATCAT
TTGCTGATGCAATTGCATACATATGTTCAATTTATGCCAAGCTATGAAAAACCTAATGAT
ACTTCAGGTTTGTCTCTCTCAGATTTTGGAACATCACCTAAACAATCAATCAATACAATG
TCACCCGAAAAATCACCAATGAGTGATCCTTTGGATGTTCCTAATTCAACTTCAAATGCA
CGACAAATACCGTCTTCCAGTCAAAAATCTATTTGCAGTAATTTTAGTGTTGATGATAAT
GATGATAGCATGAATTCATTGGATGACGATGAAAAAATCAAAGAACTTTTAAATTCATTT
GATGAATGTGATAGACAAGCGATTTTAAAAGTACCTGCAAGCTCTAATTTTGAAGATCTC
AATTTGATGGTACGATTGAAACAAAGTGGATATTTTCAAGGTGAACATCATTTGATAAAT
TTCGTGATGTGTTGATTCTTTATGAAACTGAAGATGCAGCAAGCTGCTTAGGATTTAAAT
AA
>g9799.t4 Gene=g9799 Length=248
MSNDSDLSLDQVFQMVGHLVYWAKATIIYPLCETNVYVISPDAPIHVNSPLVEKFANKFP
GMSLIEVISDFSLPTSIGHLTTPLQHPARQGRLAQMVLWMLQHHLLMQLHTYVQFMPSYE
KPNDTSGLSLSDFGTSPKQSINTMSPEKSPMSDPLDVPNSTSNARQIPSSSQKSICSNFS
VDDNDDSMNSLDDDEKIKELLNSFDECDRQAILKVPASSNFEDLNLMVRLKQSGYFQGEH
HLINFVMC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g9799.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 179 | - |
| 2 | g9799.t4 | PANTHER | PTHR13153 | CGTHBA PROTEIN -14 GENE PROTEIN | 2 | 243 | 3.0E-44 |
| 1 | g9799.t4 | Pfam | PF03666 | Nitrogen Permease regulator of amino acid transport activity 3 | 3 | 113 | 1.0E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0034198 | cellular response to amino acid starvation | BP |
| GO:0032007 | negative regulation of TOR signaling | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
