General information for g980.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lipase 3.
Parent gene
- The parent gene g980 is located on chr_3: 7244649..7245185 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g980 | g980.t1 | TTS | g980.t1 | 7244628 | 7244628 |
| chr_3 | g980 | g980.t1 | isoform | g980.t1 | 7244649 | 7245185 |
| chr_3 | g980 | g980.t1 | exon | g980.t1.exon1 | 7244649 | 7245185 |
| chr_3 | g980 | g980.t1 | cds | g980.t1.CDS1 | 7244649 | 7245185 |
| chr_3 | g980 | g980.t1 | TSS | g980.t1 | NA | NA |
Sequences
>g980.t1 Gene=g980 Length=537
ATGAAATTTTTTGGTCAAAATGAATTCCTGCCACAAAATAAAATCATCAAATGGCTCTCA
AAATATGGATGTGAAATGAATGAAGTTGAAAAGTATATTTGTGAAAATACACTTTTCGTT
ATCGCAGGTTTTGATAAAGAGCAGTACAATTCAACATTAGCTTCAGTTATTTTTGCACAC
AGTCCTGCTGGTACATCAACAAAAACAGTTGTGCATTACGCACAAGAAATACAAGAGAGT
GGAAATTTCCAAAACTTCGATTACGGCAAAGAAGAAAATGAACGTCGTTATGGTTCAGAG
CATCCACCACAGTACAATTTATCAAATGTCAATGTTCCAATTGCACTTTTCTATGCACAA
AATGATTGGCTTGCTGGCTATCAAGATGTTAAGAAATTATATACAAATTTACATTCTGCA
ATTATGTTTTACAAAATTCCTTTTGACAATTTTAATCATGTTGATTTCCTTTGGGGAATC
GACGCAAAAGAATTTGTTTATGACAAAATGATAGAATTAATGAAAGACTATAAATAA
>g980.t1 Gene=g980 Length=178
MKFFGQNEFLPQNKIIKWLSKYGCEMNEVEKYICENTLFVIAGFDKEQYNSTLASVIFAH
SPAGTSTKTVVHYAQEIQESGNFQNFDYGKEENERRYGSEHPPQYNLSNVNVPIALFYAQ
NDWLAGYQDVKKLYTNLHSAIMFYKIPFDNFNHVDFLWGIDAKEFVYDKMIELMKDYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g980.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 176 | 0 |
| 1 | g980.t1 | PANTHER | PTHR11005:SF88 | LIPASE | 7 | 177 | 0 |
| 2 | g980.t1 | PANTHER | PTHR11005 | LYSOSOMAL ACID LIPASE-RELATED | 7 | 177 | 0 |
| 3 | g980.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 10 | 174 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed