General information for g9800.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial pyruvate carrier 2.
Parent gene
- The parent gene g9800 is located on chr_1: 5246066..5246779 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9800 | g9800.t1 | TTS | g9800.t1 | 5245822 | 5245822 |
| chr_1 | g9800 | g9800.t1 | isoform | g9800.t1 | 5246066 | 5246779 |
| chr_1 | g9800 | g9800.t1 | exon | g9800.t1.exon1 | 5246066 | 5246332 |
| chr_1 | g9800 | g9800.t1 | cds | g9800.t1.CDS1 | 5246066 | 5246332 |
| chr_1 | g9800 | g9800.t1 | exon | g9800.t1.exon2 | 5246395 | 5246403 |
| chr_1 | g9800 | g9800.t1 | cds | g9800.t1.CDS2 | 5246395 | 5246403 |
| chr_1 | g9800 | g9800.t1 | exon | g9800.t1.exon3 | 5246672 | 5246779 |
| chr_1 | g9800 | g9800.t1 | cds | g9800.t1.CDS3 | 5246672 | 5246779 |
| chr_1 | g9800 | g9800.t1 | TSS | g9800.t1 | 5246847 | 5246847 |
Sequences
>g9800.t1 Gene=g9800 Length=384
ATGTCTTCAAGATTTTATAAATTTATCATTAAAACAATTGATAAACGTGTGCCGCAATTT
GCAAGACCTTTTTGGGAATATGAAGCTGGTCCTAAAACTATTTTCTTTTGGGCACCAATG
TGCAAGTGGGGACTAGTAATTGCTGGAATCACAGATCTCATGAGACCTGCTGAGTTGCTA
TCTACAGAACAAGCAGCTTCAATTGCTGCAACAGGTTACATTTACTCACGTTTCTCAATG
GTCATTACACCCAAAAATTACACCCTTCTCTCTGTGAATGTTTTTGTTGCCATCACGCAA
ACTATTCAACTTTTTCGAGCACTCAATTACAAATATCAACAAGGTGAATTGTTCAGCAAT
TTAAAAAGAAAAGAATTGAATTAA
>g9800.t1 Gene=g9800 Length=127
MSSRFYKFIIKTIDKRVPQFARPFWEYEAGPKTIFFWAPMCKWGLVIAGITDLMRPAELL
STEQAASIAATGYIYSRFSMVITPKNYTLLSVNVFVAITQTIQLFRALNYKYQQGELFSN
LKRKELN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9800.t1 | PANTHER | PTHR14154:SF2 | MITOCHONDRIAL PYRUVATE CARRIER 2 | 20 | 112 | 0 |
| 3 | g9800.t1 | PANTHER | PTHR14154 | UPF0041 BRAIN PROTEIN 44-RELATED | 20 | 112 | 0 |
| 1 | g9800.t1 | Pfam | PF03650 | Mitochondrial pyruvate carriers | 23 | 120 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006850 | mitochondrial pyruvate transmembrane transport | BP |
| GO:0005743 | mitochondrial inner membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K22139 (mitochondrial pyruvate carrier 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed