General information for g981.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g981 is located on chr_3: 7246959..7247246 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g981 | g981.t1 | TSS | g981.t1 | 7246209 | 7246209 |
| chr_3 | g981 | g981.t1 | isoform | g981.t1 | 7246959 | 7247246 |
| chr_3 | g981 | g981.t1 | exon | g981.t1.exon1 | 7246959 | 7247246 |
| chr_3 | g981 | g981.t1 | cds | g981.t1.CDS1 | 7246959 | 7247246 |
| chr_3 | g981 | g981.t1 | TTS | g981.t1 | NA | NA |
Sequences
>g981.t1 Gene=g981 Length=288
ATGTGCGAGCTACCACACCAAGCGGAATTCTTCCAAAAGTTTCTAAATCCACTCAATTGG
ATACCAAAAATACCTGAAGTTCCTTGGAATCCTGATAGCGAATTAACAACACCAGAAATT
ATTGTTAGACATGGATATCAAGCTGAAACCCACACAGTACAAACTGAAGATGGTTATTTG
TTAAATATGCATAGAATTCCTTGCGGAAGAGCTGGTTGTAGTGATGAAATTCGGCAACCA
GTGTTTTACAACATGGAATTCTCGCAAGCAGTGCAGACTGGATTTTGA
>g981.t1 Gene=g981 Length=95
MCELPHQAEFFQKFLNPLNWIPKIPEVPWNPDSELTTPEIIVRHGYQAETHTVQTEDGYL
LNMHRIPCGRAGCSDEIRQPVFYNMEFSQAVQTGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g981.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 26 | 88 | 0 |
| 2 | g981.t1 | PANTHER | PTHR11005:SF88 | LIPASE | 29 | 84 | 0 |
| 3 | g981.t1 | PANTHER | PTHR11005 | LYSOSOMAL ACID LIPASE-RELATED | 29 | 84 | 0 |
| 1 | g981.t1 | Pfam | PF04083 | Partial alpha/beta-hydrolase lipase region | 38 | 83 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006629 | lipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed