General information for g9812.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mediator of RNA polymerase II transcription subunit 12.
Parent gene
- The parent gene g9812 is located on chr_1: 5365304..5368794 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9812 | g9812.t2 | TSS | g9812.t2 | 5355892 | 5355892 |
| chr_1 | g9812 | g9812.t2 | isoform | g9812.t2 | 5355995 | 5365304 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon1 | 5355995 | 5357650 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS1 | 5355995 | 5357650 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon2 | 5358011 | 5359853 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS2 | 5358011 | 5359853 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon3 | 5359916 | 5360414 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS3 | 5359916 | 5360414 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon4 | 5361146 | 5362066 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS4 | 5361146 | 5362066 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon5 | 5362390 | 5363537 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS5 | 5362390 | 5363537 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon6 | 5363778 | 5364866 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS6 | 5363778 | 5364866 |
| chr_1 | g9812 | g9812.t2 | exon | g9812.t2.exon7 | 5365168 | 5365304 |
| chr_1 | g9812 | g9812.t2 | cds | g9812.t2.CDS7 | 5365168 | 5365304 |
| chr_1 | g9812 | g9812.t2 | TTS | g9812.t2 | NA | NA |
Sequences
>g9812.t2 Gene=g9812 Length=7293
ATGTTTAGCGAGGCATATCTTGAGAAGCGTCCGCTAAAGAGGCCAAAATTAGGCCCGGCA
GACGTCTATCCGCAAGAAGTAAAGCAAAAAGAAGATGAGTTAACTTCTCTCAATGTAAAA
CACGGCTTTTCAGCCACGATTCAATCGAGTGAAGAATTTGGGACTGCCAGAAATTGTAAT
GTGACCGCCTCAAAGGTTGGCGCATATTTCAATGCAATTTTGGCCAAAAAAGAAGAACTT
GCGACGTTAACTGACTCAGGGCGTAAAAAACAACACGTAAAAGATAACTTTTGGCCTGTA
ACTCAAAGAACTAAGCAAACTTTAGACAATTGGTTTAAGGATTTAGCTGGAAATAAACCA
TTAAGTAGTTTAGCTAAGAAAGCACCGTCATTTAATAAAAAAGAGGAAATTTTCGCAATG
CTCTGTGAAAATCAAGTTACAATGCAAAGAGCTGCATGGTTTATTAAACTTTCATCAGCT
TATACAGTTGCAGTGTCAGAAGCGAAAATTAAAAAACGACAAATGCCTGATCCAGCAACT
GAATGGACAGGAACAATGATTAAATTTTTAAAAGATTTAGTACCGAAATTGCTTGAATAT
TATCATACAGGACCACCAATTGAAAAACCTTCATCAAACATTTCTTCTAATACTAATCCT
TCATCTAATCTCAATACAAGTTCTTCCTCATCTACATCAACATTAACTATACCACCGCCT
CTTGCTAGTCCAGCTGGTTCTTCGTCTACAAGCACTTCATTAATTCCAATTCCAGCAACA
CCACAAGAGGAGCAAAAATTGGCTTTAAAACAATGGAATTATTGTACGCAATTGTGTAAA
TACATGTTTGAGGAAGGACTTTTAGATAAACATGAGTTTCTAAATTGGATCCTTGAATTA
CTTGATAAACTTAGAACTCAGCCACAAAGTGAAGATGGAATACTCAAGCTTTATCTGCCA
CTAACTTTAGCTTATATGCAAGATTTTGTCATGTCAGAGCGATTGTCTAGAAAATTGGCA
TATTTATCAGCTAAAAAGCTCTCATCAATGCTTAATGACATGTTAAATCATATTATTATA
GATGGTAATAAAAATGATCAGAATTCAGAAAATAAGACTGGTGAAAATGGAGAAATAAAA
AATTTGAACCCTTATGAGAAGGCACTTGAAGAATATTTGACTTGTTGTCAACATAGAGAC
ATAATTATGCAATTGAGTTGTATTTTACAAGTTATAACACTTGATTGCCCAACAGCACTT
ATTTGGAGTGGTGTGGGTGAGAATCGACAATCGACATTGACCGGTAGTCCGCTTGACCAC
TTGCCCATTTCACCATCAACTCTTCCTATGCCTGAGAAATCACCAAAAAGCAATGAAGAG
TTGAGAATGAAATTAAAAGCAGCAGAAAACAATATAAAATATCGATCGCAACAAGCAGAA
TCACGTTGGTGTGCTGATAAGTGGCGAACATTGACTGGGAATGCAACAATTAAATTATTG
ACAATTTTAGACACACTTGATAGTTATTTCTTTGATAGAATGGATAGCAACAATTCATTA
GATACATTATATGCTAAAATATTTCCATCATTACAAGATTCATCGAGAGAACATGGCAAC
AGTAGTGGTGATAATAAAGATCAAAAATTTGATTATGATGTAAATTCAGATGAAGATACA
GTTAAGATTCTTTGTGAATGGGCAGTATCAACACATCGTTGGGGTGAACACCGAGCATTT
GTTGTTGCCCGTCTTTTAGATAAAAGACAAAATGAAGTTTTAGCAATGGAAAATGAAGCC
AATAATATTGATGATAAAGATTCAGACTTTGGCTCATTTGGGACGCCAGTTTTTCAAGGA
ATTTTACTGAAATTTCTTGATAATGCGCCAGTCCTTGAAGAAAATGGAAGTTTACAAAAT
AGAAATCAATTTAAAAATCTTGTTCATCTCTTTAGTGAACTGATTCGTAATGATGTTTTC
TCACATGATGCTTATATGTGCACTCTAATTTCACGAGGCGATTTACTTAATCCACCATCC
ACATTTACTTCCAATATTGTAACAAAAAGTTCAACAAATGTTGCTCAAACAAGCAGCAGT
GCAAATGCAGGCGGCGATGATGATTTCTTTTCTGAAATTGATTTTAAATTAAAACCACCG
AAAATGGAGGAATTTGATGACTCGAATGTTGATGATGATTTAGAAAAATTAATTCAAAAT
ATTAAAGATGGACAACAAAATTCGATGGATGCACCAGATAGTCCAAAAGACAATGAAAAT
CTTACCAATTTGCCATCAATCACGAATGACAAAAACATGACATCGGGAAATGCTGGCGCT
TGTCGTCACTATCTTTATACAATGCATTTTCCTTTATCACAAGATGATGCATCACAACAT
GATTGTAATCAACGCTATGTTCTACTTTATGGTGTAGGAAAAGAACGCGATGAACGAAAA
CATTCAGTTAAAAAAATGTCAAAAGAAATTTGTAAATTATTTAGTAAAAAATTCAGTATC
GATGTTGCCGAAGGCGGAAAAGTGAAAAAACATTCAAGAAATGAATTTAATTTTGAATCA
ACACTCAACAAGTGTCAAATGATGTGCTATTTTGACCAACATTTTGTAACATGGCAATGC
GCTGTGACTGTGCAAGAAATGCTCAATAGCTTTGCTAATGGAAACTCAAATTATTTGCCA
GTTGCTGAGCATGTTGCTTTCTTATTTGACCTCATGGAAGTTGCTTTAAATATTTATGGA
GTAATTGACATGTGTATTCAAATTCTTAAAGAATTACCTGATGTTGAAGCACAATTAATG
GCAAAAAATTCAAATTTGATCAAGAGTTATACGACAACATTGAGTTTGTATATAGTTGGA
ATTTTAAGAAGATACAATAGTTGCTTGTTGCTTTCACCAGATCAAACAACAGCTGTTTTT
GAAGGTCTTTGTAAAGTTGTTAAGCACGTCAGTAATCCTTCAGATTGTACATCAGCTGAA
AGATGTATTCTTGCTTATCTTTATGACCTTTATCTCGCATGTTCAATATTAAGAACAAAA
CCACCTTCCGAACCATTTCATAATGCTTATCCGAAGATAAAACAAACAATTTACGCTCCA
ATAAAACTCTCACCATCACCACAACAACATAATCCACAATATATGATGGAAATTCTCACG
AATCCAAAGCGAGGAAAAATTGAATCAAGTTGGGGTCGACAATTGAGTGAATCGCAGCAG
AATCGATACAGTTTTGTGTGTAATGCAATTATCGCGATATGTCGAGAATCTGACAATGAT
AAATTAAATGATATTGCAATCATGTGTGCTGAATTAACAGCATGTTGTAATTCTTTGAGT
GCAGAATGGTTTGGCGCACTTGGTGCTCTTTGCAATACGAAAAATGAGACGGGCTATTAT
GTAGAAATTCTCAATTCTGTTGATTTACAAAATGTCCATATTTACAATTCAATTGCGGTT
TTCACTTGCATCTTGATTGCCCGACATTGTTTCTCACTTGTTGACTTTGTTGCCCTTGTC
GCATTGCCTGCTTTATTGCTTTCATGCCGAAGTGAAGCAATTATGAATGAAGCTGAGGCT
AGCGCCAGATTGACTTGTCATATTTTGTTGCGATTATTTCAGGCAATCGAATATCCGCAA
GCTTCAATGTACTCTGTCAGTACTTCACCAATTCAGAGTGTTGGTCCAATGAATAGCAAT
ATTAAATTGAGTTGTGACAGATTGTTGCTTGGTGGTGCACAGAAAAATATTCCAGTTGCG
CCTGTTTTAGCTGTTTTGAAAGCAATTCTTGTCGTTGCTGATGCTACTGTGAATAAAACT
TCGTATGGAAGTGGCAAAAAGAGTGGATTAAATACACCCGTGCATCCTGGGAGCACACCG
AAAAGCAGCATGAGTGGACCAGTTGATCTGAGTCACATTTTGGGAACTAGAGAAGATATG
GGAATTCTTGGTGATGATGATATGGGACTTGACCTTGGAAGTGCATCTAACAATCTCAAC
AGTAGCGAAAATGCTCCAAGCTTGTCTGATTTTGCACATCATGTTCTTAAGCAGATTTGT
ACACAAGAATGGGTGCTTGAATGTTGCCTCAAGAATTGCGATGAGATGTGTAAAGATGAA
ATTCTTTTAGATAATATGCTGACAAATAAGCAAGCTCAACGACTCTTGCATATGATTGTT
TATGACCAAGAAACAAATGCAAAGATTGAAGCCAATATGGATCAGAAATCACAGATTGTT
CGAATTTTGGAAAATTTAGAGCAATGGTCTTTAAGAATTTCTTTGTTAGATTTACAACTT
ATGTACAAACAAACTCAAAGTAATTCATCCGAATTCTCATCGTGGTTGGATACAGTTGCA
CGTGCTGCAATTGATGTTTTTATACCAAATGAAGAACGAAAATTGACTAAAAATAAACCA
CCTAAATGGCTTATTGCACCGTTGGTAGGAAAATTGCCGAGTGAAGTGCAAGGAAGAATT
TTAAAGGTTGCCGGGCAAGTACTTGAAAGTACAAACAGTTTTGGTGCCAAAAACAAATCA
TCTGAGAATACTGAAGGCAATGGTTCGAATGGAAGAAAGCGAAATACACAGATTGACAAT
CAACCTTTCCTTGGTCTCATTCTCACATGTCTAAGGGGACAAGATGATCAAAAAGAAACG
CTACTGCAATCACTTCATTCTCAACTGTCACAATTTCTTCAGAACAAGGACTTAGAAAAC
GTGGGAGGAATTGATGATCCAAATGGACGTCAAGAGATGCTTAGCGCATTGCAATTGAGA
TTTTCCCTTGTGGGAAGCATGTTTGATACAATTCAAAAAAATTCAACATCAACAACCGAT
TGGGCTTTGTTACTTGCACAAATGATGAGCCAGGGAATAATCGATCTGAATAACAATTCC
GCTTTATTTTATACAGCATTAGACATGTTGACGACACTTATACATTCGACTCTTATCATC
GATAACGAGCGAGATGAAAACAAGAAGTTATACACGAATCTCATGAAGAAACTTCGTAAA
GAATTGGCTGATAAAAATAGTCCTACGATAAAGTTGGTAAGGCAATTGCTGCCACATGCA
AAAGCAGCATGCTCCAATACTTGTGAAGTGATTGCATGCGAACCAGTTGGAAGTCTCATG
GATACGAAAGGATTAAGAGTTAATGAGAAGGAAAAAGTTAGCATGTGGGATTTACTTGAA
GGTCATAAAAATCCTGCACCTTTATTATGGACATGGTTTGGTGCCGTGAAAATGGAAAGA
AAGCCTCTAACTTATGAAGAAAATCATCGTCTATTGAAATATCACACTCATAGCTTAGTA
AAGCCATCATCATATTATTATGAACCTTTACCACTTCCACCAGAAGATGCAGAAGAGCCA
ATGCAAGATAAAAATCGAGATGATAAAGCAGATACACCTTCGTCTGTTGAATCACCTGCT
GCACCTGGATCAGCTAAAAGAAAAGCTGCTAAAAGACAGAGAAAACCAAAACCTGCAGCA
ACTCCAACTCAAATTAATCCAATGCAGCAGCAGATGCAGAATCAAGGCATGATGGGACAA
CAAATGATGAATCCACAGATGAACCAACAATTTAATCCCAATCAGCAGATGAATAATATG
GGAATGATGCAAAACAATATGATGATGAATCAAATGAATCCAATGGGTAGTGGAATGGGT
CAAAATATGAATCAAGGTCAAATGCAGATGAATAATCAAATGGGCATGAATCAGATGCAA
AACAATCCACAAATGGGACAAATGAATCCCATGCAATATCAACAACAGCAGCAACAGCAA
CAAATGAATCAAATGGGGCAGATGAACATGAATATGAATCAGAATATGAACATGGCTCAA
CAAAATATGAATATGAACATGAATCAAATGGGTCAACAGAATCAAAATTGGAATTATAAT
CCCATGCAGCAACAACAAGCTCAACAGCAACAACAACAAGGTCCTCAAGGCAATCAACAA
CAGTTCTACAATCAAAATGTCGCCGGAGGTGGTGGTGGCATGAGTGGAAACATGGGAAAC
ACACAGATGAATCAATTCGATCGACCTCCTTTGACAACTTCAAAACAAGCTATTTCAAAT
ATGTTACAAATGCGTCAACGACATCCCAACCCAAATCCAAATACTCAGTTCAACATGCAA
CAACAAAGAATGCAAATGATGCAGAATCAACAACAGCAGCAAAATCCTCAAATGCTTCAA
AGACAGCAAATGCTTCGAATGAGAATGGGAAAACCAATGAATACAACTGGTGGAATGATA
AATCAAACAGTGAATACAAACGCAATGGGAATGGGTGGAGCACAACAACAAAATCCAAAT
GCAATGATGCAAGGCAATCAACAGGCAATGATGGCTACTGGTGGTCAAAATCAAGGCATG
ATGGGACAACAAGCACAAAATCCAATAAATACAATGCAACAGCAAGGTAATCAGCAAGCG
ATGATGACGCCTGGAAATCAAAATCAGGGCATGATGGGACAGCAGAATCCAAATGCTATG
AACACAATGCAGCAGCAAAGCAATCAGCAAGGTATGATGGGTGCAGGCAACCAAAATCAG
GGAATGATGGGCGTTGGTAATCAAATGGGAAATATGCAAGCACAAATGCATCAACAGGGA
AATACTGGAAATCCACAACAGCAAGGTGGAATGTTTAATCCAAATCAATATCAAAATATG
AATCAAAACTTTTCTGGTTACAATCCAACGATGGGAAATCAAGGTGGAATGCAGAATCAA
CAGCAAGGAACAAATGCAGGTGGTGGAGCGATGATGAACAATTTTCAGCAAACAAACAAT
CCAAATGTTGCCGCACAACAGCAACCAAGAAATCCACAGGCAGAATTTCTTGCCCAGCAG
CGTCGTAATCAATTCATGCAAAATCAACAGCAACAACAAAATCCGCAAATGCAACAACAG
CAGCAAGCTCCAAACGTAACGATGAACTCAAATATGGGCTCAAATATGAATGTTGGTCCA
CAACAAGGAGGTAATTTGCCGCCATATCGCCAACAGCAAGGCGGCAAACCAATGATAAAT
CCAAGCACTCAGCAATTTCAGGAAATGCGTATGCGGCAAATGATGATGAAACAACAACAA
CAGCAGCAACAGCAAGGTATGGGACCAAATCAAAATTTACAACAACAAACGCCTGCACTT
GTCGCTCAACTCCAACGCTCAATGCCAAGTCAAATGATGGGTCAACAAAATCAGCAACAG
CAGCAACAAAATTTCAATCAAGGACCATTTTAA
>g9812.t2 Gene=g9812 Length=2430
MFSEAYLEKRPLKRPKLGPADVYPQEVKQKEDELTSLNVKHGFSATIQSSEEFGTARNCN
VTASKVGAYFNAILAKKEELATLTDSGRKKQHVKDNFWPVTQRTKQTLDNWFKDLAGNKP
LSSLAKKAPSFNKKEEIFAMLCENQVTMQRAAWFIKLSSAYTVAVSEAKIKKRQMPDPAT
EWTGTMIKFLKDLVPKLLEYYHTGPPIEKPSSNISSNTNPSSNLNTSSSSSTSTLTIPPP
LASPAGSSSTSTSLIPIPATPQEEQKLALKQWNYCTQLCKYMFEEGLLDKHEFLNWILEL
LDKLRTQPQSEDGILKLYLPLTLAYMQDFVMSERLSRKLAYLSAKKLSSMLNDMLNHIII
DGNKNDQNSENKTGENGEIKNLNPYEKALEEYLTCCQHRDIIMQLSCILQVITLDCPTAL
IWSGVGENRQSTLTGSPLDHLPISPSTLPMPEKSPKSNEELRMKLKAAENNIKYRSQQAE
SRWCADKWRTLTGNATIKLLTILDTLDSYFFDRMDSNNSLDTLYAKIFPSLQDSSREHGN
SSGDNKDQKFDYDVNSDEDTVKILCEWAVSTHRWGEHRAFVVARLLDKRQNEVLAMENEA
NNIDDKDSDFGSFGTPVFQGILLKFLDNAPVLEENGSLQNRNQFKNLVHLFSELIRNDVF
SHDAYMCTLISRGDLLNPPSTFTSNIVTKSSTNVAQTSSSANAGGDDDFFSEIDFKLKPP
KMEEFDDSNVDDDLEKLIQNIKDGQQNSMDAPDSPKDNENLTNLPSITNDKNMTSGNAGA
CRHYLYTMHFPLSQDDASQHDCNQRYVLLYGVGKERDERKHSVKKMSKEICKLFSKKFSI
DVAEGGKVKKHSRNEFNFESTLNKCQMMCYFDQHFVTWQCAVTVQEMLNSFANGNSNYLP
VAEHVAFLFDLMEVALNIYGVIDMCIQILKELPDVEAQLMAKNSNLIKSYTTTLSLYIVG
ILRRYNSCLLLSPDQTTAVFEGLCKVVKHVSNPSDCTSAERCILAYLYDLYLACSILRTK
PPSEPFHNAYPKIKQTIYAPIKLSPSPQQHNPQYMMEILTNPKRGKIESSWGRQLSESQQ
NRYSFVCNAIIAICRESDNDKLNDIAIMCAELTACCNSLSAEWFGALGALCNTKNETGYY
VEILNSVDLQNVHIYNSIAVFTCILIARHCFSLVDFVALVALPALLLSCRSEAIMNEAEA
SARLTCHILLRLFQAIEYPQASMYSVSTSPIQSVGPMNSNIKLSCDRLLLGGAQKNIPVA
PVLAVLKAILVVADATVNKTSYGSGKKSGLNTPVHPGSTPKSSMSGPVDLSHILGTREDM
GILGDDDMGLDLGSASNNLNSSENAPSLSDFAHHVLKQICTQEWVLECCLKNCDEMCKDE
ILLDNMLTNKQAQRLLHMIVYDQETNAKIEANMDQKSQIVRILENLEQWSLRISLLDLQL
MYKQTQSNSSEFSSWLDTVARAAIDVFIPNEERKLTKNKPPKWLIAPLVGKLPSEVQGRI
LKVAGQVLESTNSFGAKNKSSENTEGNGSNGRKRNTQIDNQPFLGLILTCLRGQDDQKET
LLQSLHSQLSQFLQNKDLENVGGIDDPNGRQEMLSALQLRFSLVGSMFDTIQKNSTSTTD
WALLLAQMMSQGIIDLNNNSALFYTALDMLTTLIHSTLIIDNERDENKKLYTNLMKKLRK
ELADKNSPTIKLVRQLLPHAKAACSNTCEVIACEPVGSLMDTKGLRVNEKEKVSMWDLLE
GHKNPAPLLWTWFGAVKMERKPLTYEENHRLLKYHTHSLVKPSSYYYEPLPLPPEDAEEP
MQDKNRDDKADTPSSVESPAAPGSAKRKAAKRQRKPKPAATPTQINPMQQQMQNQGMMGQ
QMMNPQMNQQFNPNQQMNNMGMMQNNMMMNQMNPMGSGMGQNMNQGQMQMNNQMGMNQMQ
NNPQMGQMNPMQYQQQQQQQQMNQMGQMNMNMNQNMNMAQQNMNMNMNQMGQQNQNWNYN
PMQQQQAQQQQQQGPQGNQQQFYNQNVAGGGGGMSGNMGNTQMNQFDRPPLTTSKQAISN
MLQMRQRHPNPNPNTQFNMQQQRMQMMQNQQQQQNPQMLQRQQMLRMRMGKPMNTTGGMI
NQTVNTNAMGMGGAQQQNPNAMMQGNQQAMMATGGQNQGMMGQQAQNPINTMQQQGNQQA
MMTPGNQNQGMMGQQNPNAMNTMQQQSNQQGMMGAGNQNQGMMGVGNQMGNMQAQMHQQG
NTGNPQQQGGMFNPNQYQNMNQNFSGYNPTMGNQGGMQNQQQGTNAGGGAMMNNFQQTNN
PNVAAQQQPRNPQAEFLAQQRRNQFMQNQQQQQNPQMQQQQQAPNVTMNSNMGSNMNVGP
QQGGNLPPYRQQQGGKPMINPSTQQFQEMRMRQMMMKQQQQQQQQGMGPNQNLQQQTPAL
VAQLQRSMPSQMMGQQNQQQQQQNFNQGPF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g9812.t2 | Coils | Coil | Coil | 458 | 478 | - |
| 13 | g9812.t2 | Coils | Coil | Coil | 586 | 606 | - |
| 5 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 253 | - |
| 7 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1284 | 1306 | - |
| 10 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1514 | 1536 | - |
| 6 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1797 | 1813 | - |
| 9 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1797 | 1848 | - |
| 8 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2305 | 2324 | - |
| 11 | g9812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2371 | 2430 | - |
| 3 | g9812.t2 | PANTHER | PTHR46007 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 | 2 | 1975 | 0.0 |
| 1 | g9812.t2 | Pfam | PF09497 | Transcription mediator complex subunit Med12 | 100 | 156 | 2.3E-17 |
| 2 | g9812.t2 | Pfam | PF12145 | Eukaryotic Mediator 12 subunit domain | 328 | 809 | 4.5E-179 |
| 4 | g9812.t2 | SMART | SM01281 | Med12_2 | 96 | 156 | 1.3E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | BP |
| GO:0016592 | mediator complex | CC |
| GO:0003712 | transcription coregulator activity | MF |
KEGG
Orthology
- This transcript has been annotated with K15162 (mediator of RNA polymerase II transcription subunit 12)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
