General information for g9812.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mediator of RNA polymerase II transcription subunit 12.
Parent gene
- The parent gene g9812 is located on chr_1: 5365304..5368794 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9812 | g9812.t5 | isoform | g9812.t5 | 5358011 | 5358827 |
| chr_1 | g9812 | g9812.t5 | exon | g9812.t5.exon1 | 5358011 | 5358827 |
| chr_1 | g9812 | g9812.t5 | cds | g9812.t5.CDS1 | 5358140 | 5358826 |
| chr_1 | g9812 | g9812.t5 | TSS | g9812.t5 | NA | NA |
| chr_1 | g9812 | g9812.t5 | TTS | g9812.t5 | NA | NA |
Sequences
>g9812.t5 Gene=g9812 Length=817
GATGTAAATTCAGATGAAGATACAGTTAAGATTCTTTGTGAATGGGCAGTATCAACACAT
CGTTGGGGTGAACACCGAGCATTTGTTGTTGCCCGTCTTTTAGATAAAAGACAAAATGAA
GTTTTAGCAATGGAAAATGAAGCCAATAATATTGATGATAAAGATTCAGACTTTGGCTCA
TTTGGGACGCCAGTTTTTCAAGGAATTTTACTGAAATTTCTTGATAATGCGCCAGTCCTT
GAAGAAAATGGAAGTTTACAAAATAGAAATCAATTTAAAAATCTTGTTCATCTCTTTAGT
GAACTGATTCGTAATGATGTTTTCTCACATGATGCTTATATGTGCACTCTAATTTCACGA
GGCGATTTACTTAATCCACCATCCACATTTACTTCCAATATTGTAACAAAAAGTTCAACA
AATGTTGCTCAAACAAGCAGCAGTGCAAATGCAGGCGGCGATGATGATTTCTTTTCTGAA
ATTGATTTTAAATTAAAACCACCGAAAATGGAGGAATTTGATGACTCGAATGTTGATGAT
GATTTAGAAAAATTAATTCAAAATATTAAAGATGGACAACAAAATTCGATGGATGCACCA
GATAGTCCAAAAGACAATGAAAATCTTACCAATTTGCCATCAATCACGAATGACAAAAAC
ATGACATCGGGAAATGCTGGCGCTTGTCGTCACTATCTTTATACAATGCATTTTCCTTTA
TCACAAGATGATGCATCACAACATGATTGTAATCAACGCTATGTTCTACTTTATGGTGTA
GGAAAAGAACGCGATGAACGAAAACATTCAGTTAAAA
>g9812.t5 Gene=g9812 Length=229
MENEANNIDDKDSDFGSFGTPVFQGILLKFLDNAPVLEENGSLQNRNQFKNLVHLFSELI
RNDVFSHDAYMCTLISRGDLLNPPSTFTSNIVTKSSTNVAQTSSSANAGGDDDFFSEIDF
KLKPPKMEEFDDSNVDDDLEKLIQNIKDGQQNSMDAPDSPKDNENLTNLPSITNDKNMTS
GNAGACRHYLYTMHFPLSQDDASQHDCNQRYVLLYGVGKERDERKHSVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9812.t5 | PANTHER | PTHR46007 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 | 18 | 229 | 0 |
| 3 | g9812.t5 | PANTHER | PTHR46007:SF2 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 | 18 | 229 | 0 |
| 1 | g9812.t5 | Pfam | PF12145 | Eukaryotic Mediator 12 subunit domain | 2 | 214 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed