General information for g9817.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9817 is located on chr_1: 5377525..5379222 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9817 | g9817.t2 | TSS | g9817.t2 | 5377479 | 5377479 |
| chr_1 | g9817 | g9817.t2 | isoform | g9817.t2 | 5377480 | 5378709 |
| chr_1 | g9817 | g9817.t2 | exon | g9817.t2.exon1 | 5377480 | 5378709 |
| chr_1 | g9817 | g9817.t2 | cds | g9817.t2.CDS1 | 5377525 | 5378709 |
| chr_1 | g9817 | g9817.t2 | TTS | g9817.t2 | 5379303 | 5379303 |
Sequences
>g9817.t2 Gene=g9817 Length=1230
AGTTTAAAAGATTACTTGGAACAAACAAGTCGACTTTTAAAAACAATGGCAAAGTTTAAT
ACGAAAACAAAAATTTGGGAAGCTGAAAAAATTCCATATCCATATTCAATGGATGTATAT
CTTGGTGAAATAATTCTCAAGAATTGTGATGAAACTCCTGATCGTGTAATTCAAATTCAT
CACGAAGAAAATTCTTTTCTAAATTGTCAACTATTAAAAGAATCGAGTATTAAAATTGCG
CAAAACTTAATTGGAATTGGAATCAAAGAAGACGACATAATTGGAGTAATTTCTAGAAAT
TCAAATTATGTAACTTGTTTTCTCACTGGTTCAATTTTAATGGGTGGAATCATTCATCCA
TTAGATCACAGTTTGTCAACAGAAAACATCCGTCAACTCTATGCACACACAAGACCAAAA
TTGATAATTTGTGACCCCGAGGTGATTTCGTCAGTTCAAGATGCTCTCAAAGATATTAAT
TTATCACCATTAATCTACATTGTGACAAAAAATAGTAATAAACTTAATGGAATGCCAAGT
GCTTATGAATTACTCCGTGAAACTGATAAAAATAACAAATTTATGCCCTTAAAATTCAAA
AAACCAGCTGATGAGAAGCTTTTGGCAATTTTATGTTCTAGTGGAATAGGAGGTTTACAA
AAAGGTGTTTGCATTAGTCATGCTTCATGTTTAAGTTTTATTATCAACGATAAACATAAG
AATAAAACACCAGCAAAACCTTTGTCATTCAGCTCAATTTATTGGAGCAGAGGATTTTTG
CTTAATATTTATGCTTCATTCTATCCAAATGATGTTAGAATTTGGAGTCGTGATGATTTT
AATGTCGATAAATTGGTCGAAATTATCAGAGATAGACAAATAACTGAAATAAGTCTTGCT
CCATCATCACTCGCAGCCATTCTTGAATCAGACTTTTTTATTGAGTCTGATCATGAAAGC
TGTAGAAAATTTATTGTTCTCGGTTCAATGTTCTCTGCATCATTGAGACAAAAATTTAGA
AAAACCTTTCCCGAAAAAACTCTTTTGACTGGCTATGGGTTGACTGAGCAGTTCATTTCA
CTTTCAAAGCCTAATGAGTGCTATAATGGAATCACAGTTGGATCATTGATTACACCAAAT
CTACAGCTTAAGATTGTCAATGAAAAAGGTGAAAGTGTTAATCCAGGAGAGCGTGGCGAA
ATACGAGTGAAACCGCAATTTAAATTTCTA
>g9817.t2 Gene=g9817 Length=395
MAKFNTKTKIWEAEKIPYPYSMDVYLGEIILKNCDETPDRVIQIHHEENSFLNCQLLKES
SIKIAQNLIGIGIKEDDIIGVISRNSNYVTCFLTGSILMGGIIHPLDHSLSTENIRQLYA
HTRPKLIICDPEVISSVQDALKDINLSPLIYIVTKNSNKLNGMPSAYELLRETDKNNKFM
PLKFKKPADEKLLAILCSSGIGGLQKGVCISHASCLSFIINDKHKNKTPAKPLSFSSIYW
SRGFLLNIYASFYPNDVRIWSRDDFNVDKLVEIIRDRQITEISLAPSSLAAILESDFFIE
SDHESCRKFIVLGSMFSASLRQKFRKTFPEKTLLTGYGLTEQFISLSKPNECYNGITVGS
LITPNLQLKIVNEKGESVNPGERGEIRVKPQFKFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9817.t2 | Gene3D | G3DSA:3.40.50.12780 | - | 8 | 392 | 0 |
| 2 | g9817.t2 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 3 | 393 | 0 |
| 3 | g9817.t2 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 3 | 393 | 0 |
| 1 | g9817.t2 | Pfam | PF00501 | AMP-binding enzyme | 32 | 389 | 0 |
| 4 | g9817.t2 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 10 | 390 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
