Gene loci information

Transcript annotation

  • This transcript has been annotated as Delta-aminolevulinic acid dehydratase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9823 g9823.t2 TTS g9823.t2 5395014 5395014
chr_1 g9823 g9823.t2 isoform g9823.t2 5395121 5396417
chr_1 g9823 g9823.t2 exon g9823.t2.exon1 5395121 5395452
chr_1 g9823 g9823.t2 cds g9823.t2.CDS1 5395121 5395452
chr_1 g9823 g9823.t2 exon g9823.t2.exon2 5395689 5395805
chr_1 g9823 g9823.t2 cds g9823.t2.CDS2 5395689 5395797
chr_1 g9823 g9823.t2 exon g9823.t2.exon3 5395864 5396417
chr_1 g9823 g9823.t2 TSS g9823.t2 5396696 5396696

Sequences

>g9823.t2 Gene=g9823 Length=1003
ATGTCAGCGAAAAATAAACTTCACTCATCGCAATTTCATCCACTTTTGAGGAAGTTTAAT
GAGCAAAATGTTGACATATTACCCCATAATTTGATGTATCCAATTTTCATTGTGTAAGAA
TTTAGAATTCTCAATGAGCCAATTGTAAATTCATTTATTATAATAATTTATATTTCAGTG
AAGATGATTCGAGTCAACAAGTTATTCCTTCGATGCCAAGTGTTTATCGTTTTGGTTTAA
AAAAGCTCATTGATCATTTAACTCCTTTAGTTGAACTTGGATTGAAATCAATTCTTGTCT
TTGGTGTTATCGATACATTGACAAAAGATGAAACTGGCTCGAATGCTGATTCCAAGAAAA
ATCCTGTGATTAAAGCTCTTCCAATTTTGCGTAAAAAATTTCCTGAATTGCTCATTGCTT
GTGATGTTTGTCTTTGTCCTTATACGGATCATGGCCATTGCGGAATTATCGAGGACGGTG
TGATTAATAATGAGAAGAGCATTGAAAGAATTGCAAACATTGCGCTTGAGTATGCACGTC
ATGGAGCTCACATTAAAATGGAATGGAAAAAAATTGTTCTGTTCTTTCTTACTCGGCCAA
GTTTGCAAGTGGTTTTTATGGTCCATTTAGAGATGCTGCAAAATCAATTCCACAGCAAGG
AGATCGAAAAACATATCAATTGCCTGCTGGCAGTCGTGGATTAGCAATACGTGCAGTAAG
ACGTGATGTTGAAGAAGGCGCTGACATGCTTATGGTTAAGCCTGGAATTTCTTATCTTGA
TATCGTGCGTGATGTCAAAAATGAATTTCCTGAATATCCAATGTTCATTTATCAAGTTTC
TGGCGAATATACAATGCTTGTTTATGGTGCCAAGGCTGGTGCATTTGACTTGAAAACCGT
ACTGACAGAAATTCTCGTTTCAATGAGACGTGCTGGAGTCGATGTAATTATCTCTTACTT
TACACCAAATATTCTCGAATGGATGAAAGAAGGAAGCTTTTAA

>g9823.t2 Gene=g9823 Length=146
MEKNCSVLSYSAKFASGFYGPFRDAAKSIPQQGDRKTYQLPAGSRGLAIRAVRRDVEEGA
DMLMVKPGISYLDIVRDVKNEFPEYPMFIYQVSGEYTMLVYGAKAGAFDLKTVLTEILVS
MRRAGVDVIISYFTPNILEWMKEGSF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g9823.t2 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 144 1.2E-65
2 g9823.t2 PANTHER PTHR11458:SF0 DELTA-AMINOLEVULINIC ACID DEHYDRATASE 3 143 3.6E-59
3 g9823.t2 PANTHER PTHR11458 DELTA-AMINOLEVULINIC ACID DEHYDRATASE 3 143 3.6E-59
7 g9823.t2 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 7 26 4.6E-34
5 g9823.t2 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 59 75 4.6E-34
4 g9823.t2 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 85 100 4.6E-34
6 g9823.t2 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 115 134 4.6E-34
1 g9823.t2 Pfam PF00490 Delta-aminolevulinic acid dehydratase 3 140 3.9E-60
10 g9823.t2 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 59 71 -
9 g9823.t2 SMART SM01004 ALAD_2 1 141 2.7E-23
8 g9823.t2 SUPERFAMILY SSF51569 Aldolase 3 143 3.81E-59

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0033014 tetrapyrrole biosynthetic process BP
GO:0003824 catalytic activity MF
GO:0004655 porphobilinogen synthase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed