Gene loci information

Transcript annotation

  • This transcript has been annotated as Delta-aminolevulinic acid dehydratase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9823 g9823.t4 TTS g9823.t4 5395014 5395014
chr_1 g9823 g9823.t4 isoform g9823.t4 5395121 5396417
chr_1 g9823 g9823.t4 exon g9823.t4.exon1 5395121 5395430
chr_1 g9823 g9823.t4 cds g9823.t4.CDS1 5395420 5395430
chr_1 g9823 g9823.t4 exon g9823.t4.exon2 5395689 5396239
chr_1 g9823 g9823.t4 cds g9823.t4.CDS2 5395689 5396239
chr_1 g9823 g9823.t4 exon g9823.t4.exon3 5396305 5396417
chr_1 g9823 g9823.t4 cds g9823.t4.CDS3 5396305 5396417
chr_1 g9823 g9823.t4 TSS g9823.t4 5396696 5396696

Sequences

>g9823.t4 Gene=g9823 Length=974
ATGTCAGCGAAAAATAAACTTCACTCATCGCAATTTCATCCACTTTTGAGGAAGTTTAAT
GAGCAAAATGTTGACATATTACCCCATAATTTGATGTATCCAATTTTCATTGTTGAAGAT
GATTCGAGTCAACAAGTTATTCCTTCGATGCCAAGTGTTTATCGTTTTGGTTTAAAAAAG
CTCATTGATCATTTAACTCCTTTAGTTGAACTTGGATTGAAATCAATTCTTGTCTTTGGT
GTTATCGATACATTGACAAAAGATGAAACTGGCTCGAATGCTGATTCCAAGAAAAATCCT
GTGATTAAAGCTCTTCCAATTTTGCGTAAAAAATTTCCTGAATTGCTCATTGCTTGTGAT
GTTTGTCTTTGTCCTTATACGGATCATGGCCATTGCGGAATTATCGAGGACGGTGTGATT
AATAATGAGAAGAGCATTGAAAGAATTGCAAACATTGCGCTTGAGTATGCACGTCATGGA
GCTCACATTGTCGCTCCCTCAGATATGATGGATAATCGTATCTTTGCTATCAAGTCACGT
CTCATAGAAAATGGAATGGAAAAAAATTGTTCTGTTCTTTCTTACTCGGCCAAGTTTGCA
AGTGGTTTTTATGGTCCATTTAGAGATGCTGCAAAATCAATTCCACAGCAAGGAGATCGA
AAAATCGTGGATTAGCAATACGTGCAGTAAGACGTGATGTTGAAGAAGGCGCTGACATGC
TTATGGTTAAGCCTGGAATTTCTTATCTTGATATCGTGCGTGATGTCAAAAATGAATTTC
CTGAATATCCAATGTTCATTTATCAAGTTTCTGGCGAATATACAATGCTTGTTTATGGTG
CCAAGGCTGGTGCATTTGACTTGAAAACCGTACTGACAGAAATTCTCGTTTCAATGAGAC
GTGCTGGAGTCGATGTAATTATCTCTTACTTTACACCAAATATTCTCGAATGGATGAAAG
AAGGAAGCTTTTAA

>g9823.t4 Gene=g9823 Length=224
MSAKNKLHSSQFHPLLRKFNEQNVDILPHNLMYPIFIVEDDSSQQVIPSMPSVYRFGLKK
LIDHLTPLVELGLKSILVFGVIDTLTKDETGSNADSKKNPVIKALPILRKKFPELLIACD
VCLCPYTDHGHCGIIEDGVINNEKSIERIANIALEYARHGAHIVAPSDMMDNRIFAIKSR
LIENGMEKNCSVLSYSAKFASGFYGPFRDAAKSIPQQGDRKIVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9823.t4 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 223 0
2 g9823.t4 PANTHER PTHR11458:SF0 DELTA-AMINOLEVULINIC ACID DEHYDRATASE 4 221 0
3 g9823.t4 PANTHER PTHR11458 DELTA-AMINOLEVULINIC ACID DEHYDRATASE 4 221 0
5 g9823.t4 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 123 137 0
4 g9823.t4 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 153 172 0
6 g9823.t4 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 192 211 0
1 g9823.t4 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 221 0
8 g9823.t4 SMART SM01004 ALAD_2 2 224 0
7 g9823.t4 SUPERFAMILY SSF51569 Aldolase 6 221 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0033014 tetrapyrrole biosynthetic process BP
GO:0003824 catalytic activity MF
GO:0004655 porphobilinogen synthase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed