General information for g9831.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trypsin gamma.
Parent gene
- The parent gene g9831 is located on chr_1: 5426194..5426898 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9831 | g9831.t12 | TTS | g9831.t12 | 5425831 | 5425831 |
| chr_1 | g9831 | g9831.t12 | isoform | g9831.t12 | 5425885 | 5426898 |
| chr_1 | g9831 | g9831.t12 | exon | g9831.t12.exon1 | 5425885 | 5425958 |
| chr_1 | g9831 | g9831.t12 | exon | g9831.t12.exon2 | 5426071 | 5426113 |
| chr_1 | g9831 | g9831.t12 | cds | g9831.t12.CDS1 | 5426101 | 5426113 |
| chr_1 | g9831 | g9831.t12 | exon | g9831.t12.exon3 | 5426186 | 5426774 |
| chr_1 | g9831 | g9831.t12 | cds | g9831.t12.CDS2 | 5426186 | 5426774 |
| chr_1 | g9831 | g9831.t12 | exon | g9831.t12.exon4 | 5426844 | 5426898 |
| chr_1 | g9831 | g9831.t12 | cds | g9831.t12.CDS3 | 5426844 | 5426898 |
| chr_1 | g9831 | g9831.t12 | TSS | g9831.t12 | 5426920 | 5426920 |
Sequences
>g9831.t12 Gene=g9831 Length=761
ATGATTCGTCAAATTGTTACAATCTTGGCAGTTATTGCCGTTGCATTTGCCTCTCCAATT
CCTGAGGATGAGTTGGATCGTGAGAGCCGTATTGTTGGTGGAACAAATGCGAACATTGCC
GATATTCCATGGCAAGTGTCATTGAGAACTACCGCTAACTTCCACTTCTGTGGTGGTTCA
ATTATTTCAAATCGTTGGATTGTAACTGCTGCTCATTGCACAGTTGGTCGTGCTGGAAAC
TCAATTAACGTCGTTGTTGGTACACACTTTCTTAACTCAGGCGGTATTGCTCATCGATCA
AACCGCATCATTAACCATCCAAGTTATAACGCCAACACAATTGCCAATGATGTCTCAGTT
GTTGAAACTGCCACGACTATTGCTTTCACGACTACTGCTCGCTCAATTCCAATGAACAGT
GCTCATATTGGTGGCGGACAGACAGTTGTTGTTTCTGGCTGGGGCGGTACAACCGTCAAC
GGCGGTGCTTCACCAAATCATCTTCAACGTTTGACTAAACAAACTTTAACAAATGCTGAT
TGCCGTGCTCGTCACTCTGCTGCTAATGCTGCTTTTGTCTTTGATCACAAGATTTGCACA
TTCACACAAGCAGGACAAGGAATCTGCCAAGGTGATTCAGGCGGAACGGACAATTGATCG
GTATCGTCTCATGGAATATCCCATGCGCTCGTGGTTTCCCAGACGCTTACGATCGTATTT
CCTCGCACAGATCTTGGATTCAACAGCAAACCGGAGTTTAA
>g9831.t12 Gene=g9831 Length=218
MIRQIVTILAVIAVAFASPIPEDELDRESRIVGGTNANIADIPWQVSLRTTANFHFCGGS
IISNRWIVTAAHCTVGRAGNSINVVVGTHFLNSGGIAHRSNRIINHPSYNANTIANDVSV
VETATTIAFTTTARSIPMNSAHIGGGQTVVVSGWGGTTVNGGASPNHLQRLTKQTLTNAD
CRARHSAANAAFVFDHKICTFTQAGQGICQGDSGGTDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9831.t12 | CDD | cd00190 | Tryp_SPc | 31 | 215 | 2.7777E-54 |
| 10 | g9831.t12 | Gene3D | G3DSA:2.40.10.10 | - | 31 | 215 | 5.7E-47 |
| 9 | g9831.t12 | Gene3D | G3DSA:2.40.10.10 | - | 43 | 135 | 5.7E-47 |
| 2 | g9831.t12 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 1 | 215 | 5.1E-46 |
| 3 | g9831.t12 | PANTHER | PTHR24276:SF78 | AT20289P-RELATED | 1 | 215 | 5.1E-46 |
| 5 | g9831.t12 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 58 | 73 | 1.2E-9 |
| 4 | g9831.t12 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 113 | 127 | 1.2E-9 |
| 6 | g9831.t12 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 206 | 218 | 1.2E-9 |
| 1 | g9831.t12 | Pfam | PF00089 | Trypsin | 31 | 215 | 2.7E-39 |
| 12 | g9831.t12 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 13 | g9831.t12 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 14 | g9831.t12 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 12 | - |
| 15 | g9831.t12 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 11 | g9831.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 218 | - |
| 18 | g9831.t12 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 68 | 73 | - |
| 19 | g9831.t12 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 31 | 218 | 22.713 |
| 17 | g9831.t12 | SMART | SM00020 | trypsin_2 | 30 | 215 | 2.0E-36 |
| 7 | g9831.t12 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 6 | 215 | 8.89E-53 |
| 8 | g9831.t12 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed