General information for g9852.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9852 is located on chr_1: 5601455..5602507 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9852 | g9852.t1 | TTS | g9852.t1 | 5601361 | 5601361 |
| chr_1 | g9852 | g9852.t1 | isoform | g9852.t1 | 5601455 | 5602507 |
| chr_1 | g9852 | g9852.t1 | exon | g9852.t1.exon1 | 5601455 | 5601829 |
| chr_1 | g9852 | g9852.t1 | cds | g9852.t1.CDS1 | 5601455 | 5601829 |
| chr_1 | g9852 | g9852.t1 | exon | g9852.t1.exon2 | 5601891 | 5602292 |
| chr_1 | g9852 | g9852.t1 | cds | g9852.t1.CDS2 | 5601891 | 5602292 |
| chr_1 | g9852 | g9852.t1 | exon | g9852.t1.exon3 | 5602358 | 5602507 |
| chr_1 | g9852 | g9852.t1 | cds | g9852.t1.CDS3 | 5602358 | 5602507 |
| chr_1 | g9852 | g9852.t1 | TSS | g9852.t1 | 5602538 | 5602538 |
Sequences
>g9852.t1 Gene=g9852 Length=927
ATGTTTGAACAGAAAAACTCGGTAATAAATCTCGCAGACTGCGTAGAATCAAACTGCCGA
ATGTGCTTAAAAAGATTTGAAGAATATGATTTGAAGTTGCAAATTACAGAGAATATTAAG
AACAATTTTGAAAAATTGGTCAATATTGAGCTTAAACTTTCAACAAGGTATCCACAGTAC
ATTTGTATAACTTGTCATAATAAATTGGCTAGATTCGCAAATTATCGTCAAGATATTATA
CAAAAGCAAGATCTTATTTCAATTTTCAATGGACAAAGAATTTTGGTCGATTCAAGCACT
CCGAATGCAGTAATAGCAAAAGTTCTAGGAAATAACAAGGAACAAGTGAATCCAGAGATT
AAATTTTTGATTCCAGATCAAGAAATGTACGAAATTGATGAAGATCGTTATCAAGATAAT
TACTATCAAATGCAAGATCCAACGACATCAAAAATGAGTAATGCAAATAAGAAAGATGAA
GACATACCATTCAAATGTGAGTTTTGCTTTAAAGAATTTAAGCGTCAACGAACACTCAAT
GAACATCGTGATAAAATACATTACAATCAAATCAATTATTTCTGTGATAATTGTGGCTAT
GGTGCTTTTAAAAAATATGATCTAAAACGTCATATGCGAACTCACATCTCTAAAGAATTT
CGTAAAACCTATGAATGCAACATTTGTCATATTAAATTGTTGAGTCCTGAAGGATTGAAA
CGACACATTAAAAATATACATTCAACTACTGAAAATTATCACTGCAATTATTGCTATGAA
AATTTTTTCCGGGTTGTGGATTTCAATTCGCATATGGATAGTGTTCACGGTACCAAGACT
TTATTTGCTTGCAATTTGTGTAATGATTTCTATGGCACCAGATACAGCTTGAGAAAGCAT
AAGAAGGACTGTAAACAAAAAATTTAA
>g9852.t1 Gene=g9852 Length=308
MFEQKNSVINLADCVESNCRMCLKRFEEYDLKLQITENIKNNFEKLVNIELKLSTRYPQY
ICITCHNKLARFANYRQDIIQKQDLISIFNGQRILVDSSTPNAVIAKVLGNNKEQVNPEI
KFLIPDQEMYEIDEDRYQDNYYQMQDPTTSKMSNANKKDEDIPFKCEFCFKEFKRQRTLN
EHRDKIHYNQINYFCDNCGYGAFKKYDLKRHMRTHISKEFRKTYECNICHIKLLSPEGLK
RHIKNIHSTTENYHCNYCYENFFRVVDFNSHMDSVHGTKTLFACNLCNDFYGTRYSLRKH
KKDCKQKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g9852.t1 | Gene3D | G3DSA:3.40.1800.20 | - | 17 | 88 | 2.4E-7 |
| 23 | g9852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 159 | 188 | 7.7E-6 |
| 22 | g9852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 189 | 247 | 2.6E-11 |
| 21 | g9852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 248 | 308 | 5.0E-8 |
| 4 | g9852.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 18 | 216 | 1.2E-27 |
| 6 | g9852.t1 | PANTHER | PTHR23226:SF167 | IP01388P-RELATED | 18 | 216 | 1.2E-27 |
| 5 | g9852.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 146 | 302 | 1.2E-27 |
| 7 | g9852.t1 | PANTHER | PTHR23226:SF167 | IP01388P-RELATED | 146 | 302 | 1.2E-27 |
| 1 | g9852.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 19 | 86 | 4.0E-8 |
| 3 | g9852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 164 | 187 | 0.012 |
| 2 | g9852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 193 | 215 | 0.0034 |
| 18 | g9852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 166 | 187 | - |
| 20 | g9852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 226 | 247 | - |
| 19 | g9852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 255 | 276 | - |
| 26 | g9852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 164 | 192 | 10.45 |
| 25 | g9852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 193 | 220 | 10.305 |
| 27 | g9852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 224 | 252 | 8.933 |
| 12 | g9852.t1 | SMART | SM00868 | zf_AD_2 | 18 | 89 | 0.0065 |
| 14 | g9852.t1 | SMART | SM00355 | c2h2final6 | 164 | 187 | 0.03 |
| 13 | g9852.t1 | SMART | SM00355 | c2h2final6 | 193 | 215 | 0.0057 |
| 16 | g9852.t1 | SMART | SM00355 | c2h2final6 | 224 | 247 | 0.016 |
| 15 | g9852.t1 | SMART | SM00355 | c2h2final6 | 253 | 276 | 0.42 |
| 17 | g9852.t1 | SMART | SM00355 | c2h2final6 | 282 | 302 | 46.0 |
| 8 | g9852.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 19 | 85 | 8.7E-7 |
| 10 | g9852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 163 | 215 | 1.67E-7 |
| 11 | g9852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 205 | 262 | 5.78E-7 |
| 9 | g9852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 252 | 302 | 1.22E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed