General information for g9852.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9852 is located on chr_1: 5601455..5602507 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9852 | g9852.t3 | TTS | g9852.t3 | 5601361 | 5601361 |
| chr_1 | g9852 | g9852.t3 | isoform | g9852.t3 | 5601455 | 5602507 |
| chr_1 | g9852 | g9852.t3 | exon | g9852.t3.exon1 | 5601455 | 5601829 |
| chr_1 | g9852 | g9852.t3 | cds | g9852.t3.CDS1 | 5601455 | 5601829 |
| chr_1 | g9852 | g9852.t3 | exon | g9852.t3.exon2 | 5601891 | 5602507 |
| chr_1 | g9852 | g9852.t3 | cds | g9852.t3.CDS2 | 5601891 | 5602058 |
| chr_1 | g9852 | g9852.t3 | TSS | g9852.t3 | 5602538 | 5602538 |
Sequences
>g9852.t3 Gene=g9852 Length=992
ATGTTTGAACAGAAAAACTCGGTAATAAATCTCGCAGACTGCGTAGAATCAAACTGCCGA
ATGTGCTTAAAAAGATTTGAAGAATATGATTTGAAGTTGCAAATTACAGAGAATATTAAG
AACAATTTTGAAAAATTGGTCAATATTGAGGTAAAAATTTGAATCAAATTCATAAAATCT
TGAAAATATAGTTTATTTTATATCATTTCTTTTAGCTTAAACTTTCAACAAGGTATCCAC
AGTACATTTGTATAACTTGTCATAATAAATTGGCTAGATTCGCAAATTATCGTCAAGATA
TTATACAAAAGCAAGATCTTATTTCAATTTTCAATGGACAAAGAATTTTGGTCGATTCAA
GCACTCCGAATGCAGTAATAGCAAAAGTTCTAGGAAATAACAAGGAACAAGTGAATCCAG
AGATTAAATTTTTGATTCCAGATCAAGAAATGTACGAAATTGATGAAGATCGTTATCAAG
ATAATTACTATCAAATGCAAGATCCAACGACATCAAAAATGAGTAATGCAAATAAGAAAG
ATGAAGACATACCATTCAAATGTGAGTTTTGCTTTAAAGAATTTAAGCGTCAACGAACAC
TCAATGAACATCGTGATAAAATACATTACAATCAAATCAATTATTTCTGTGATAATTGTG
GCTATGGTGCTTTTAAAAAATATGATCTAAAACGTCATATGCGAACTCACATCTCTAAAG
AATTTCGTAAAACCTATGAATGCAACATTTGTCATATTAAATTGTTGAGTCCTGAAGGAT
TGAAACGACACATTAAAAATATACATTCAACTACTGAAAATTATCACTGCAATTATTGCT
ATGAAAATTTTTTCCGGGTTGTGGATTTCAATTCGCATATGGATAGTGTTCACGGTACCA
AGACTTTATTTGCTTGCAATTTGTGTAATGATTTCTATGGCACCAGATACAGCTTGAGAA
AGCATAAGAAGGACTGTAAACAAAAAATTTAA
>g9852.t3 Gene=g9852 Length=180
MYEIDEDRYQDNYYQMQDPTTSKMSNANKKDEDIPFKCEFCFKEFKRQRTLNEHRDKIHY
NQINYFCDNCGYGAFKKYDLKRHMRTHISKEFRKTYECNICHIKLLSPEGLKRHIKNIHS
TTENYHCNYCYENFFRVVDFNSHMDSVHGTKTLFACNLCNDFYGTRYSLRKHKKDCKQKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g9852.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 31 | 60 | 3.6E-6 |
| 17 | g9852.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 61 | 120 | 1.1E-11 |
| 16 | g9852.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 121 | 180 | 3.2E-8 |
| 3 | g9852.t3 | PANTHER | PTHR24377 | IP01015P-RELATED | 26 | 174 | 3.1E-21 |
| 4 | g9852.t3 | PANTHER | PTHR24377:SF809 | IP01015P-RELATED | 26 | 174 | 3.1E-21 |
| 2 | g9852.t3 | Pfam | PF00096 | Zinc finger, C2H2 type | 36 | 59 | 0.0056 |
| 1 | g9852.t3 | Pfam | PF00096 | Zinc finger, C2H2 type | 65 | 87 | 0.0016 |
| 14 | g9852.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 38 | 59 | - |
| 13 | g9852.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 98 | 119 | - |
| 15 | g9852.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 127 | 148 | - |
| 20 | g9852.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 36 | 64 | 10.45 |
| 19 | g9852.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 65 | 92 | 10.305 |
| 21 | g9852.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 96 | 124 | 8.933 |
| 12 | g9852.t3 | SMART | SM00355 | c2h2final6 | 36 | 59 | 0.03 |
| 8 | g9852.t3 | SMART | SM00355 | c2h2final6 | 65 | 87 | 0.0057 |
| 11 | g9852.t3 | SMART | SM00355 | c2h2final6 | 96 | 119 | 0.016 |
| 9 | g9852.t3 | SMART | SM00355 | c2h2final6 | 125 | 148 | 0.42 |
| 10 | g9852.t3 | SMART | SM00355 | c2h2final6 | 154 | 174 | 46.0 |
| 5 | g9852.t3 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 35 | 87 | 5.57E-10 |
| 7 | g9852.t3 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 77 | 134 | 3.34E-8 |
| 6 | g9852.t3 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 124 | 174 | 5.08E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed