Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Angiotensin-converting enzyme-like protein Ace3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g986 g986.t5 isoform g986.t5 7262965 7265470
chr_3 g986 g986.t5 exon g986.t5.exon1 7262965 7262972
chr_3 g986 g986.t5 cds g986.t5.CDS1 7262966 7262972
chr_3 g986 g986.t5 exon g986.t5.exon2 7263029 7263221
chr_3 g986 g986.t5 cds g986.t5.CDS2 7263029 7263221
chr_3 g986 g986.t5 exon g986.t5.exon3 7263273 7263369
chr_3 g986 g986.t5 cds g986.t5.CDS3 7263273 7263369
chr_3 g986 g986.t5 exon g986.t5.exon4 7263429 7263749
chr_3 g986 g986.t5 cds g986.t5.CDS4 7263429 7263749
chr_3 g986 g986.t5 exon g986.t5.exon5 7264712 7264903
chr_3 g986 g986.t5 cds g986.t5.CDS5 7264712 7264897
chr_3 g986 g986.t5 exon g986.t5.exon6 7265467 7265470
chr_3 g986 g986.t5 TSS g986.t5 7265656 7265656
chr_3 g986 g986.t5 TTS g986.t5 NA NA

Sequences

>g986.t5 Gene=g986 Length=815
ATGAATAAAAATGTTGATGTTTTTGCAAATAATTGCGGTTGCATTAGTCAGTGTTAATGC
ACAATTAACAGAAGAACAAATGTTACAGCATTTAGAAGAATATGACAATAAAACAAAACT
ACTATGCAATGCACAAGCTAAAGCCAATTGGGCAGTTCAAACTGATGTTGGAAATCTAAC
TAAAGAAGCGGCTCAGGCTGAAGCTATTTTGGCTTATTCATCTTATAGACAAGAGCAATA
TGAAACAATTTTCAAAAATGCACCATCTTATTCAAATGAAGACATCACAAGAAAACTTAA
ATTGCTTAAAGAAGTTGGAACTGCAGCTTTATCAGCAGATGATTTAAGAAATTTAACAGC
AACAAGAACAAGAATGTCGAAAATTTACAATTCAGCTAAAATTTGTCCATTCGATAACCA
AAATTGTAATAAAACTACTCAAGGAATGTTTTTAGATCCAAATATTGAATTAGCTCTTGC
AAAATCAACAAATTATGATGAATTGCAGTATCTTTGGGAAAAATGGCGTGATGAATCAGG
AAAATTGATGAGAGATGACTATAAAACTTATATTGATTTATATAATAAAGCTGCACAACT
TAATGGATATTCAGATGCTGGTGCAATGTGGAGAGGACGATATGAAGAAGAACGATTGGT
TGAAATTGTCGATGAATTATGGGCTGAAGTTGAGCCGCTCTATAACGAACTTCATACTTA
CGTTCGATATAAATTGCTTGAAATTTATGGTGATAAAATGGACAAATATGATCCATTGAT
TCCAGCTCACGTTTTTGGTAACATGTGGGCACAAA

>g986.t5 Gene=g986 Length=268
MLMFLQIIAVALVSVNAQLTEEQMLQHLEEYDNKTKLLCNAQAKANWAVQTDVGNLTKEA
AQAEAILAYSSYRQEQYETIFKNAPSYSNEDITRKLKLLKEVGTAALSADDLRNLTATRT
RMSKIYNSAKICPFDNQNCNKTTQGMFLDPNIELALAKSTNYDELQYLWEKWRDESGKLM
RDDYKTYIDLYNKAAQLNGYSDAGAMWRGRYEEERLVEIVDELWAEVEPLYNELHTYVRY
KLLEIYGDKMDKYDPLIPAHVFGNMWAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g986.t5 PANTHER PTHR10514 ANGIOTENSIN-CONVERTING ENZYME 10 268 4.9E-71
3 g986.t5 PRINTS PR00791 Peptidyl-dipeptidase A (M2) metalloprotease family signature 220 247 1.7E-10
4 g986.t5 PRINTS PR00791 Peptidyl-dipeptidase A (M2) metalloprotease family signature 255 268 1.7E-10
1 g986.t5 Pfam PF01401 Angiotensin-converting enzyme 20 268 4.7E-61
8 g986.t5 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
9 g986.t5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
10 g986.t5 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 13 -
11 g986.t5 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 17 -
7 g986.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 268 -
5 g986.t5 SUPERFAMILY SSF55486 Metalloproteases (zincins), catalytic domain 21 268 5.13E-60
6 g986.t5 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008241 peptidyl-dipeptidase activity MF
GO:0008237 metallopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed