General information for g9890.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mitochondrial enolase superfamily member 1.
Parent gene
- The parent gene g9890 is located on chr_1: 5898916..5902604 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9890 | g9890.t4 | TTS | g9890.t4 | 5897453 | 5897453 |
| chr_1 | g9890 | g9890.t4 | isoform | g9890.t4 | 5897549 | 5898916 |
| chr_1 | g9890 | g9890.t4 | exon | g9890.t4.exon1 | 5897549 | 5897826 |
| chr_1 | g9890 | g9890.t4 | cds | g9890.t4.CDS1 | 5897549 | 5897826 |
| chr_1 | g9890 | g9890.t4 | exon | g9890.t4.exon2 | 5898198 | 5898916 |
| chr_1 | g9890 | g9890.t4 | cds | g9890.t4.CDS2 | 5898198 | 5898657 |
| chr_1 | g9890 | g9890.t4 | TSS | g9890.t4 | NA | NA |
Sequences
>g9890.t4 Gene=g9890 Length=997
ATGATGAGAAAAGTTTGTGAACCCTGCAATATTTTTATTTCAAAATATTTGTAAATAACT
GTTATGAAATTTTTTGTTTCAGTTCTTAGTATCACTCATTGATTTTCGCTATTGCACTGA
TGTATTGACTAAGCAAGAAGCTATTGATTTATTGAAAAAATCATCTTTTGGTAAAGAGGA
GCGTGAAAAAGATTTATTGAAAAATGGATATCGCAGTTATACAACAGCTGTTGGTTGGTT
AAATTATAATGATGAGAAAATGATTGCTTTATGCGATAAATATTTAGCAAAGAATTTTAA
TGCATTTAAAATTAAAATTGGTCAAGATTTAAAACGTGATATAGAACGTTGTCGTATGAT
GAGAAAACGTATTGGTGAAGATAAAGTTTTGATGGTTGATAGTAATCAAATTTTCGATGT
TCAAGAAGCAATCGATTGGATTACTGCTTTAAAAGATTTTAATATTTTATGGTTTGAAGA
ACCAACGTCACCAGATGATGTGCTTGGACATAAAAAAATTGCTGAAGCAATAAAAGAATT
TGGCATTGGTGTTGCAAGTGGTGAAATGATTTGTAATCGTGTGATTTTTAAACAATTCAT
GCAAGTGGGAGCATTTAAATTTTGTCAAGTTGATTCAGCAAGAATTGGTGGAGTAAGCGA
ATTATTGATAGTTTATCTCATGGCAAAGAAAATGAATGTTAACGTCACTCCACATGCAGG
TGGAGTCGGTTTGTCTGAGATGATTCAACATTTGCAATTTTGGGATTATATTTGTGTATC
AGGCACAAAAGAAGGAAGATATATTGAGTATGTTGATCAGTCTCATGATTACTTTGTTGA
CGGTGTTGTAGTTGAAAATGCACATTATCAAGCAAAGATGGTACCAGGTTTTAACACACA
ATTCACTGATGAATGTATTGAAAATTATGCATATCCGCATGGTAAAAAATGGCAAGAGTT
ATTTGATGCAAATATTTTTCCAAGACCTGCTAAATAA
>g9890.t4 Gene=g9890 Length=245
MIALCDKYLAKNFNAFKIKIGQDLKRDIERCRMMRKRIGEDKVLMVDSNQIFDVQEAIDW
ITALKDFNILWFEEPTSPDDVLGHKKIAEAIKEFGIGVASGEMICNRVIFKQFMQVGAFK
FCQVDSARIGGVSELLIVYLMAKKMNVNVTPHAGGVGLSEMIQHLQFWDYICVSGTKEGR
YIEYVDQSHDYFVDGVVVENAHYQAKMVPGFNTQFTDECIENYAYPHGKKWQELFDANIF
PRPAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9890.t4 | Gene3D | G3DSA:3.20.20.120 | Enolase superfamily | 1 | 237 | 0 |
| 2 | g9890.t4 | PANTHER | PTHR13794 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE | 3 | 234 | 0 |
| 1 | g9890.t4 | Pfam | PF13378 | Enolase C-terminal domain-like | 6 | 216 | 0 |
| 6 | g9890.t4 | SFLD | SFLDS00001 | Enolase | 1 | 226 | 0 |
| 4 | g9890.t4 | SMART | SM00922 | MR_MLE_2 | 1 | 92 | 0 |
| 3 | g9890.t4 | SUPERFAMILY | SSF51604 | Enolase C-terminal domain-like | 1 | 230 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
