General information for g9892.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial enolase superfamily member 1.
Parent gene
- The parent gene g9892 is located on chr_1: 5902605..5903181 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9892 | g9892.t1 | isoform | g9892.t1 | 5902605 | 5903181 |
| chr_1 | g9892 | g9892.t1 | exon | g9892.t1.exon1 | 5902605 | 5902739 |
| chr_1 | g9892 | g9892.t1 | cds | g9892.t1.CDS1 | 5902605 | 5902739 |
| chr_1 | g9892 | g9892.t1 | exon | g9892.t1.exon2 | 5902802 | 5903041 |
| chr_1 | g9892 | g9892.t1 | cds | g9892.t1.CDS2 | 5902802 | 5903041 |
| chr_1 | g9892 | g9892.t1 | exon | g9892.t1.exon3 | 5903110 | 5903181 |
| chr_1 | g9892 | g9892.t1 | cds | g9892.t1.CDS3 | 5903110 | 5903181 |
| chr_1 | g9892 | g9892.t1 | TSS | g9892.t1 | 5903219 | 5903219 |
| chr_1 | g9892 | g9892.t1 | TTS | g9892.t1 | NA | NA |
Sequences
>g9892.t1 Gene=g9892 Length=447
ATGAAAATAAATTATCGTGAAATTATTAAAAGTGTTGAAGCTTTAGATATTCGTTTCCCA
ACAAGTTTACAGCAAGATGGAAGCGATGCGGTTCATACAGATCCTGACTACTCAGCAGCT
TATGTAATTATAACTACTGAAAGTGGTAAAAAAGGATATGGAATGACATTCACATTAGGA
AGAGGCACAAATATTGTATGCACTGCTATCGATACAATGAAATTTTTATTGGAAAATAAG
AGTCTTGATGATATTTATGGAAATTTTAGTTCATTTTGGAGACAACTTACATCTGAGCCA
CAATTGAGATGGCTTGGTCCAGAGAAAGGAGTCATTCATCTTGCTACAAGCGCCATCACA
AGTGCTCTTTTCGATTTATGGGGAAGACTCGAAAAAAAACCTGTTTGGAAGCTATTGACA
GACATGACACCTGAAGTGAGTTATTAG
>g9892.t1 Gene=g9892 Length=148
MKINYREIIKSVEALDIRFPTSLQQDGSDAVHTDPDYSAAYVIITTESGKKGYGMTFTLG
RGTNIVCTAIDTMKFLLENKSLDDIYGNFSSFWRQLTSEPQLRWLGPEKGVIHLATSAIT
SALFDLWGRLEKKPVWKLLTDMTPEVSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9892.t1 | Gene3D | G3DSA:3.30.390.10 | - | 4 | 148 | 0e+00 |
| 2 | g9892.t1 | PANTHER | PTHR13794 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE | 8 | 145 | 0e+00 |
| 1 | g9892.t1 | Pfam | PF02746 | Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | 30 | 139 | 7e-07 |
| 3 | g9892.t1 | SUPERFAMILY | SSF54826 | Enolase N-terminal domain-like | 9 | 142 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
