General information for g9903.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Methyltransferase type 11.
Parent gene
- The parent gene g9903 is located on chr_1: 5918686..5922225 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9903 | g9903.t1 | isoform | g9903.t1 | 5918686 | 5922225 |
| chr_1 | g9903 | g9903.t1 | exon | g9903.t1.exon1 | 5918686 | 5918904 |
| chr_1 | g9903 | g9903.t1 | cds | g9903.t1.CDS1 | 5918686 | 5918904 |
| chr_1 | g9903 | g9903.t1 | exon | g9903.t1.exon2 | 5918964 | 5920381 |
| chr_1 | g9903 | g9903.t1 | cds | g9903.t1.CDS2 | 5918964 | 5920381 |
| chr_1 | g9903 | g9903.t1 | exon | g9903.t1.exon3 | 5920442 | 5920813 |
| chr_1 | g9903 | g9903.t1 | cds | g9903.t1.CDS3 | 5920442 | 5920813 |
| chr_1 | g9903 | g9903.t1 | exon | g9903.t1.exon4 | 5921585 | 5921680 |
| chr_1 | g9903 | g9903.t1 | cds | g9903.t1.CDS4 | 5921585 | 5921680 |
| chr_1 | g9903 | g9903.t1 | exon | g9903.t1.exon5 | 5921763 | 5922137 |
| chr_1 | g9903 | g9903.t1 | cds | g9903.t1.CDS5 | 5921763 | 5922137 |
| chr_1 | g9903 | g9903.t1 | exon | g9903.t1.exon6 | 5922198 | 5922225 |
| chr_1 | g9903 | g9903.t1 | cds | g9903.t1.CDS6 | 5922198 | 5922225 |
| chr_1 | g9903 | g9903.t1 | TSS | g9903.t1 | NA | NA |
| chr_1 | g9903 | g9903.t1 | TTS | g9903.t1 | NA | NA |
Sequences
>g9903.t1 Gene=g9903 Length=2508
ATGGAATATAAAATAATTTCTACCATTGGTTTCTTCTTAATTTGTCATCAGATTTGCTTT
ATCAATGGCAATGAGTTTGAATTTACGCGGGTTAGTGATGCATGGACACCGATAGTGACC
ACAAATTCAATAATTACTCGTCTTCATCGTGTGAATGAAACTCAAAGTGAAGTTATCGAA
ACAACGGTAGATGAAGCAACCACACAACAAGCAGCAGACAGTACAGTCGTCGTAGCCTGT
TCTGGCGACACAAATAATAATGAAAATTACCTAATTGAAACGTTCACCGGTGATATTATT
GTTACCACAATTTTACATCAATCGGACAATGCAATAGCGGCAGTAAAGTTTATTGTCAAG
CAAATAAATGAAATTGGTGTTCTCGCACACAACATTACAATTGGTGTGCGCATTGTAGAA
GTCTTTAAAGCGGAAAATATTTTTGATATAATAGAAAATGAGCTTGATTATTCGGAACAT
TGCATTGAAAATCCTTTTGGAATATTTTTATCAAAAAAATTCTGGCAGCAAGTTTCATCG
AGTGACAAGAATTATGAGTTGAAAATGTGGCCTTTGCCAGATATTGAGCATATGAAAATG
GAGAAAATTGCTCATTTATTGAATGAATTACCACTGCCTATAGAAAGAACCAATGCATCG
GTCGAGATAAAGACTGACTCACTAAATCGCACCAAAGAGTTAGAAAGCGTTCTTATGAAA
ACTGAGAATCTATGTTTCAAATCTTTTCCGTCCAGAGAGAATGTCTTTATTTATGTTGGA
AATGAAGAGTTCTTGGCATCTGTTCATTTTACAACCGACCAAAACCTCATTATTGTGCCT
TTCAATACGTCAAAAGAAATTAATTTCAATGAATTTCCCGATAAGTCCTTCATTGCATTA
GAATCTGAAGTGATCTCAAATATAACGTCATCGACACTGATTGCCATTGCAGCAACATTT
CTAGAAATTTCAAAGGTTGTCAATAATGCACTTTCGAAAACATTCAATCAAACTTCGCAC
TCGACAAAAGTCAATCTCACAAAATGTGAAATCTGTAATGATTTAGAAGTTTTCGGTGAG
ATTTCACTTCGAGACATAAAGAAAATTCTCAATATGTTACACATTGAAAATTTTGAGAAT
CAAATGAATTACAGACTCATGCAGAAATTTACGACTAATGGTTCTATTGAACTTCATAAA
GTTGCAACTACAAATTACATTACAAATGTAACAACTGTTTACATTATTGGTCAACATGAG
ATGACTTCATTTGGTTCATTGTACAAATGTGAAAAAGTGACTGAGAATTCTAGTCAAGAG
AAGCAACATGTTGATGATGAATTTCATATAGATGCCTTTAATCCATTAGAAGTATATCCG
CAAAAACCTTTAGATGAAGCAATAGATTTAGATAAAGATTTTAACGATATGTATTGGGAA
TTGAGATCAGAAATTTGGGTAGCTATCGGATTAACAATGGCTAGTTTAGGCATCCTCTTG
TGCATATCAATATTGACATTCATCATAATAAGAATCTGTATGGATGATGTTTTAGAAGGA
AATCCGATTGGCTCAGTGGTCATGCTCATTTCACTCATTGCTCAATTTGCTTCTTTCTTT
CCATTTACCATTGAATATGCAAGCGTTGATATCAACGAAAATAGCGATGTAATGAACTCT
ATGTGTATTATCAAAATATTTCTCGTCTCAGTGTCATACTGCCTTACCTTTTCATTATTG
CTATCACGTGCTATAATGTTAGCATCAATCGGTTCAGAAGGAGGATTTCTGAGTCATGTC
AATGGATACATACAAAGCATCATTTGCGTTTTTAGTTTCTTCGTTCAACTCGGACTATCA
ACGCAGTTACTAATTGTTATGCATGCAAATAGTCAACATATAACTTGCATGAGTATTTAT
CACGGAAATTGGTTTTGGGGTGTGATTTGTTACGATGCACTTCTGCTCATAATGTTAGTT
TTACTTTCTCCTTTTATCTACAAATCTCAACGCAATTATCAAGAAGGAACATTGATTGTC
GTTACTTCGATTTTGTGTTTAATTTGTTGGGTAATTTGGATAAGCGTTAGCATGATTAGC
GATGATTTCCGTGAAATTGCTGTCTCTTTGGGTGTACAAATTACTGCTTGGCTCATTCTT
TCTTCTTTAATGGTGCCAAGATGCTTCCTTATTGTAAAATCAATCGCTAGATCAGATTTT
GCACAAGCATTACCTTCACTTACATCACTCGCATTTGCACAAGCAAATCAATTTGGAATA
TCTGAACCAAGTATATATGAATGTGTAAATCCTGTAATGCGTCCAAGATCAATAGATGAA
AGTGATATGACAAATATTCCCAACGATTTCTTATCAGCAAGTGAATGTCCAACTTTACCT
CTACGATCAAATAACCGTGCAAGGAATTTTATTGAGCACTATAATCTCACATTTAATGAA
ATTGTTAATCCTAATTTGCCTTCACCAAATAAAATGACAAGATTTTGA
>g9903.t1 Gene=g9903 Length=835
MEYKIISTIGFFLICHQICFINGNEFEFTRVSDAWTPIVTTNSIITRLHRVNETQSEVIE
TTVDEATTQQAADSTVVVACSGDTNNNENYLIETFTGDIIVTTILHQSDNAIAAVKFIVK
QINEIGVLAHNITIGVRIVEVFKAENIFDIIENELDYSEHCIENPFGIFLSKKFWQQVSS
SDKNYELKMWPLPDIEHMKMEKIAHLLNELPLPIERTNASVEIKTDSLNRTKELESVLMK
TENLCFKSFPSRENVFIYVGNEEFLASVHFTTDQNLIIVPFNTSKEINFNEFPDKSFIAL
ESEVISNITSSTLIAIAATFLEISKVVNNALSKTFNQTSHSTKVNLTKCEICNDLEVFGE
ISLRDIKKILNMLHIENFENQMNYRLMQKFTTNGSIELHKVATTNYITNVTTVYIIGQHE
MTSFGSLYKCEKVTENSSQEKQHVDDEFHIDAFNPLEVYPQKPLDEAIDLDKDFNDMYWE
LRSEIWVAIGLTMASLGILLCISILTFIIIRICMDDVLEGNPIGSVVMLISLIAQFASFF
PFTIEYASVDINENSDVMNSMCIIKIFLVSVSYCLTFSLLLSRAIMLASIGSEGGFLSHV
NGYIQSIICVFSFFVQLGLSTQLLIVMHANSQHITCMSIYHGNWFWGVICYDALLLIMLV
LLSPFIYKSQRNYQEGTLIVVTSILCLICWVIWISVSMISDDFREIAVSLGVQITAWLIL
SSLMVPRCFLIVKSIARSDFAQALPSLTSLAFAQANQFGISEPSIYECVNPVMRPRSIDE
SDMTNIPNDFLSASECPTLPLRSNNRARNFIEHYNLTFNEIVNPNLPSPNKMTRF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9903.t1 | PANTHER | PTHR24060 | METABOTROPIC GLUTAMATE RECEPTOR | 87 | 811 | 2.9E-128 |
| 3 | g9903.t1 | PANTHER | PTHR24060:SF148 | PROTEIN BRIDE OF SEVENLESS | 87 | 811 | 2.9E-128 |
| 4 | g9903.t1 | PRINTS | PR01223 | Bride of sevenless protein signature | 486 | 511 | 8.2E-53 |
| 8 | g9903.t1 | PRINTS | PR01223 | Bride of sevenless protein signature | 565 | 591 | 8.2E-53 |
| 6 | g9903.t1 | PRINTS | PR01223 | Bride of sevenless protein signature | 606 | 630 | 8.2E-53 |
| 5 | g9903.t1 | PRINTS | PR01223 | Bride of sevenless protein signature | 644 | 667 | 8.2E-53 |
| 9 | g9903.t1 | PRINTS | PR01223 | Bride of sevenless protein signature | 676 | 700 | 8.2E-53 |
| 7 | g9903.t1 | PRINTS | PR01223 | Bride of sevenless protein signature | 705 | 727 | 8.2E-53 |
| 1 | g9903.t1 | Pfam | PF00003 | 7 transmembrane sweet-taste receptor of 3 GCPR | 500 | 729 | 3.2E-19 |
| 21 | g9903.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 484 | - |
| 26 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 485 | 510 | - |
| 19 | g9903.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 511 | 521 | - |
| 29 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 522 | 543 | - |
| 23 | g9903.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 544 | 562 | - |
| 31 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 563 | 581 | - |
| 18 | g9903.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 582 | 601 | - |
| 25 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 602 | 624 | - |
| 24 | g9903.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 625 | 643 | - |
| 28 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 644 | 666 | - |
| 17 | g9903.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 667 | 677 | - |
| 27 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 678 | 700 | - |
| 22 | g9903.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 701 | 705 | - |
| 30 | g9903.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 706 | 725 | - |
| 20 | g9903.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 726 | 835 | - |
| 10 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 487 | 509 | - |
| 13 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 522 | 544 | - |
| 14 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 559 | 581 | - |
| 16 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 607 | 629 | - |
| 15 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 644 | 666 | - |
| 12 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 678 | 700 | - |
| 11 | g9903.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 710 | 732 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0007601 | visual perception | BP |
| GO:0005118 | sevenless binding | MF |
| GO:0004930 | G protein-coupled receptor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K04623 (bride of sevenless protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
