General information for g9907.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9907 is located on chr_1: 5940587..5941511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9907 | g9907.t7 | TTS | g9907.t7 | 5939142 | 5939142 |
| chr_1 | g9907 | g9907.t7 | isoform | g9907.t7 | 5939299 | 5940836 |
| chr_1 | g9907 | g9907.t7 | exon | g9907.t7.exon1 | 5939299 | 5939795 |
| chr_1 | g9907 | g9907.t7 | exon | g9907.t7.exon2 | 5939862 | 5939948 |
| chr_1 | g9907 | g9907.t7 | cds | g9907.t7.CDS1 | 5939930 | 5939948 |
| chr_1 | g9907 | g9907.t7 | exon | g9907.t7.exon3 | 5940215 | 5940592 |
| chr_1 | g9907 | g9907.t7 | cds | g9907.t7.CDS2 | 5940215 | 5940592 |
| chr_1 | g9907 | g9907.t7 | exon | g9907.t7.exon4 | 5940655 | 5940836 |
| chr_1 | g9907 | g9907.t7 | cds | g9907.t7.CDS3 | 5940655 | 5940836 |
| chr_1 | g9907 | g9907.t7 | TSS | g9907.t7 | 5940900 | 5940900 |
Sequences
>g9907.t7 Gene=g9907 Length=1144
ATGTCCAAGACGGACAAAAAAATTGAAAAAAATGGACAGCAAGAAAGTATTAGTTCAAAA
CGACTGCCAAAATTCTTCACTTCACAGCCAGATTTATTGTTGAATCCTCTTTCTAATCAG
CGGTCACAAACGAATAAAAAAAGTTATGCACCAAACTTGAATGTGACGAGAAATAAAAAC
TCGAATGAAAAGAATAGTTTTAATGAACCGAAAAAAGATGCAAATAGTAGAACAAAACCA
CAACGAGGCAATAAAGATGGCAATAATAAAGGGAATAAGAGAAATGCTCCACAACTTATT
CAGACACATGGTTTTCTGTCTGAAGGTCTCGCTGGAACTCCTCTTACTCAAAAGAGATAT
GGCGGCGAATACTCGGGAGCTTCATCAAAAGATGTTGGTGTAGAAACAATAGTAAAGCCT
AGAATAATAAAAAGAGACCCAAGACAGATGAAAGAGGAACTTGAAACAGAGCAAAAAGTA
CTACAAGACTTTCTCGCCGATGATGATAGTGAAATGGATGAGGATGTTAAAACTCAACAA
GATGATATGATGCCTATTAAATTCGAAAAGTTGCAATAGTAATGCAGTAGTTAGTCGAAC
TAATAGTAATGATGTAAAAATTAAGATAGAAAAAACAGATGATTTCGATATAAAAAGAGA
ACCATTAGATATTCCCAATGGAATAAAAATTAAAATTGAACCAGGACTAGAGACTGAAAC
ATCAATAGAATCGCCTCCTCCACCAATACATGAATTGTTCAATGCAGATTCAAGTCAAAT
ATTTCTTTTTCAAATGCCAGATTCAATACCAGGACAAACATCTGAAGATGATGATTCATC
AAAACCATGTACTAGTGCAGAAGCAACCACTAAACCAAAATCAAGATTTTGCACACTCGA
ACATTTAGAAGAGGGGCCAATAGGGAAATTAATAAGGCACAAATCAGGAAAAATAAAATT
GAAAATTGGTGACGCTGTCTTTGACATTGATCCTGCACTAAAATGTGATTTTATTCAAAA
TGCTGTCACAATTGATTCCAATCCACAACAACGTAGTGCAAACATGTACAGTTTAGGAAA
AATTCAAACAAAATACAATGTTTCTCCTGATTGGAATTGGTTTTTTGAAAATTTAAAGTC
CTAG
>g9907.t7 Gene=g9907 Length=192
MSKTDKKIEKNGQQESISSKRLPKFFTSQPDLLLNPLSNQRSQTNKKSYAPNLNVTRNKN
SNEKNSFNEPKKDANSRTKPQRGNKDGNNKGNKRNAPQLIQTHGFLSEGLAGTPLTQKRY
GGEYSGASSKDVGVETIVKPRIIKRDPRQMKEELETEQKVLQDFLADDDSEMDEDVKTQQ
DDMMPIKFEKLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9907.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - |
| 3 | g9907.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 63 | - |
| 4 | g9907.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 89 | - |
| 1 | g9907.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 192 | - |
| 2 | g9907.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 192 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
