General information for g991.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Xylulose kinase.
Parent gene
- The parent gene g991 is located on chr_3: 7293220..7294989 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g991 | g991.t1 | TTS | g991.t1 | 7293025 | 7293025 |
| chr_3 | g991 | g991.t1 | isoform | g991.t1 | 7293220 | 7294989 |
| chr_3 | g991 | g991.t1 | exon | g991.t1.exon1 | 7293220 | 7294830 |
| chr_3 | g991 | g991.t1 | cds | g991.t1.CDS1 | 7293220 | 7294830 |
| chr_3 | g991 | g991.t1 | exon | g991.t1.exon2 | 7294948 | 7294989 |
| chr_3 | g991 | g991.t1 | cds | g991.t1.CDS2 | 7294948 | 7294989 |
| chr_3 | g991 | g991.t1 | TSS | g991.t1 | 7295061 | 7295061 |
Sequences
>g991.t1 Gene=g991 Length=1653
ATGGAGAAAACTTATTTGGGTTTGGATTTATCTACACAAAAGCTTAAAGCTGTGCTCATT
AATGACAAATTAGAAATTCTTCATCAAGCTGAAGTTAAATTTGATGTTGATTTTCCTGAA
TTTCAAACTAATGGTGGTGTTAAAGCAGGTGAAAATAAAAATGAATTCTTTTGTGATCCT
GTGATGTGGGTTAAAGCAGTTGATACTGTTCTTGATCGAATGGTCCTTCAAGGTGCAAAT
TTTACTTCAGTTCTTGCCATTAGCGGTTCAGCTCAGCAACATGGAAGTGTTTATTGGAAT
CAACATGGAATTGACAAATTACAAAATTTAGATCCTGACATGTTTCTTTATAATCAAATT
AATAGTGACGCATTTGCTGTAAAAAAGTCTCCCATTTGGATGGACTCAAGCACTACAAAG
CAATGTAAGGAAATGGAAGAAGCCGTTGGTGGACGTGATGAAATGGTGAAAATTACAGGC
AGCAAATGTTATGAACGTTTCACAGCTGCACAGATAAGAAAAATTTTCCAACAACAACGC
GATGCTTATGACAATACTGTAAGAATTTCGCTTGTTTCATCATTTTTGGCGTCAATTTTT
CTAAACAAAATTGCACCAATTGATTATTCTGATGGTTCTGGTATGAATTTGCTTGACATT
AATGAAAGACGATGGTCACAAAAATGTCTTGATGCATGTGCTGATGGTGTTGAAGAGAAA
CTTGGACAACCTGTTCCGACTGCTTCTATATTAGGAAAAATTGGAACTTTTTTTGTTCAA
CGTTATAATTTTAGTACAAGCACAAAAGTTATTGCTTTCACTGGTGATAATGCAAGTGCA
GTTGCAGGTTTAAATATTCATGATGATTGGCTTGCATTTAGCTTGGGAACATCAGATACA
ATAATGTTAAGTCTTAATCATCATCCATGCTTCACTGATGGTCATGTTTTAATTCATCCA
ACGAAAGAAAATGGTTTTATGGGATTATTGTGCTTCAAAAACGGTGCTTTGGTTCGCGAC
ACTTTTAAGAAGGCTGAAGCAAATAATAGTTGGGAAATTTTTACTGAATGTCTTCAAAAT
TCACCAAGAGGCAATAATGGTTATATGGCATTGCATTATTTGTCACAAGAAATTCTTCCA
AATGTGCCTGCTGGTAGCTTAAGATGGTGTGCATTGGATACTTATGAAAATCATTCCAAA
CGTCAACCATTAATTCAATTTCCTGTACAACAAATTGAAATTCGTGCCTTAATTGAAGGA
CAAATGTTGAATCGAAAAGCTTTTGCGATGGATATGGGATTTAATTTTGGTGAAAATACG
AAAATTTTAGCAACTGGTGGAAGTTCCATGAATTCAGCTATTCTTCAAGTTATGAGTGAT
GTTTTTAATTCTCCAGTTTATATTCAAAAGACACCAGAGGCTGCCTGTCTTGGTGCCGCT
TATCGAGCAAAATATGTGCTTTATATGGAAACTGCTAAAGAAAATGGTGATACTTATGAA
AATTATCATGATTATATCAAGAAATATTGTGATATGAAACATTATTACATTCATAGAGTA
GTTGAGCCACATGGTGATAGTAAAATTATTTACGAACCAATGCTCAAACGTTACAGGGAA
ATGGTTCAAGTTATGCTTGATCGTCAATTATAG
>g991.t1 Gene=g991 Length=550
MEKTYLGLDLSTQKLKAVLINDKLEILHQAEVKFDVDFPEFQTNGGVKAGENKNEFFCDP
VMWVKAVDTVLDRMVLQGANFTSVLAISGSAQQHGSVYWNQHGIDKLQNLDPDMFLYNQI
NSDAFAVKKSPIWMDSSTTKQCKEMEEAVGGRDEMVKITGSKCYERFTAAQIRKIFQQQR
DAYDNTVRISLVSSFLASIFLNKIAPIDYSDGSGMNLLDINERRWSQKCLDACADGVEEK
LGQPVPTASILGKIGTFFVQRYNFSTSTKVIAFTGDNASAVAGLNIHDDWLAFSLGTSDT
IMLSLNHHPCFTDGHVLIHPTKENGFMGLLCFKNGALVRDTFKKAEANNSWEIFTECLQN
SPRGNNGYMALHYLSQEILPNVPAGSLRWCALDTYENHSKRQPLIQFPVQQIEIRALIEG
QMLNRKAFAMDMGFNFGENTKILATGGSSMNSAILQVMSDVFNSPVYIQKTPEAACLGAA
YRAKYVLYMETAKENGDTYENYHDYIKKYCDMKHYYIHRVVEPHGDSKIIYEPMLKRYRE
MVQVMLDRQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g991.t1 | CDD | cd07776 | FGGY_D-XK_euk | 4 | 485 | 0.0e+00 |
| 7 | g991.t1 | Gene3D | G3DSA:3.30.420.40 | - | 6 | 516 | 0.0e+00 |
| 8 | g991.t1 | Gene3D | G3DSA:3.30.420.40 | - | 285 | 538 | 0.0e+00 |
| 3 | g991.t1 | PANTHER | PTHR10196:SF57 | XYLULOSE KINASE | 3 | 545 | 0.0e+00 |
| 4 | g991.t1 | PANTHER | PTHR10196 | SUGAR KINASE | 3 | 545 | 0.0e+00 |
| 9 | g991.t1 | PIRSF | PIRSF000538 | GlpK | 2 | 110 | 1.6e-06 |
| 10 | g991.t1 | PIRSF | PIRSF000538 | GlpK | 121 | 548 | 0.0e+00 |
| 2 | g991.t1 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 131 | 283 | 0.0e+00 |
| 1 | g991.t1 | Pfam | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain | 292 | 484 | 0.0e+00 |
| 5 | g991.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 3 | 283 | 0.0e+00 |
| 6 | g991.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 286 | 545 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004856 | xylulokinase activity | MF |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0042732 | D-xylose metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00854 (xylulokinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
