General information for g991.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Xylulose kinase.
Parent gene
- The parent gene g991 is located on chr_3: 7293220..7294989 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g991 | g991.t2 | isoform | g991.t2 | 7292966 | 7294806 |
| chr_3 | g991 | g991.t2 | exon | g991.t2.exon1 | 7292966 | 7294806 |
| chr_3 | g991 | g991.t2 | cds | g991.t2.CDS1 | 7293220 | 7294689 |
| chr_3 | g991 | g991.t2 | TSS | g991.t2 | 7295061 | 7295061 |
| chr_3 | g991 | g991.t2 | TTS | g991.t2 | NA | NA |
Sequences
>g991.t2 Gene=g991 Length=1841
AAATTAGAAATTCTTCATCAAGCTGAAGTTAAATTTGATGTTGATTTTCCTGAATTTCAA
ACTAATGGTGGTGTTAAAGCAGGTGAAAATAAAAATGAATTCTTTTGTGATCCTGTGATG
TGGGTTAAAGCAGTTGATACTGTTCTTGATCGAATGGTCCTTCAAGGTGCAAATTTTACT
TCAGTTCTTGCCATTAGCGGTTCAGCTCAGCAACATGGAAGTGTTTATTGGAATCAACAT
GGAATTGACAAATTACAAAATTTAGATCCTGACATGTTTCTTTATAATCAAATTAATAGT
GACGCATTTGCTGTAAAAAAGTCTCCCATTTGGATGGACTCAAGCACTACAAAGCAATGT
AAGGAAATGGAAGAAGCCGTTGGTGGACGTGATGAAATGGTGAAAATTACAGGCAGCAAA
TGTTATGAACGTTTCACAGCTGCACAGATAAGAAAAATTTTCCAACAACAACGCGATGCT
TATGACAATACTGTAAGAATTTCGCTTGTTTCATCATTTTTGGCGTCAATTTTTCTAAAC
AAAATTGCACCAATTGATTATTCTGATGGTTCTGGTATGAATTTGCTTGACATTAATGAA
AGACGATGGTCACAAAAATGTCTTGATGCATGTGCTGATGGTGTTGAAGAGAAACTTGGA
CAACCTGTTCCGACTGCTTCTATATTAGGAAAAATTGGAACTTTTTTTGTTCAACGTTAT
AATTTTAGTACAAGCACAAAAGTTATTGCTTTCACTGGTGATAATGCAAGTGCAGTTGCA
GGTTTAAATATTCATGATGATTGGCTTGCATTTAGCTTGGGAACATCAGATACAATAATG
TTAAGTCTTAATCATCATCCATGCTTCACTGATGGTCATGTTTTAATTCATCCAACGAAA
GAAAATGGTTTTATGGGATTATTGTGCTTCAAAAACGGTGCTTTGGTTCGCGACACTTTT
AAGAAGGCTGAAGCAAATAATAGTTGGGAAATTTTTACTGAATGTCTTCAAAATTCACCA
AGAGGCAATAATGGTTATATGGCATTGCATTATTTGTCACAAGAAATTCTTCCAAATGTG
CCTGCTGGTAGCTTAAGATGGTGTGCATTGGATACTTATGAAAATCATTCCAAACGTCAA
CCATTAATTCAATTTCCTGTACAACAAATTGAAATTCGTGCCTTAATTGAAGGACAAATG
TTGAATCGAAAAGCTTTTGCGATGGATATGGGATTTAATTTTGGTGAAAATACGAAAATT
TTAGCAACTGGTGGAAGTTCCATGAATTCAGCTATTCTTCAAGTTATGAGTGATGTTTTT
AATTCTCCAGTTTATATTCAAAAGACACCAGAGGCTGCCTGTCTTGGTGCCGCTTATCGA
GCAAAATATGTGCTTTATATGGAAACTGCTAAAGAAAATGGTGATACTTATGAAAATTAT
CATGATTATATCAAGAAATATTGTGATATGAAACATTATTACATTCATAGAGTAGTTGAG
CCACATGGTGATAGTAAAATTATTTACGAACCAATGCTCAAACGTTACAGGGAAATGGTT
CAAGTTATGCTTGATCGTCAATTATAGAATTTTTTATACTAGGTGATAAAATTTTTTTGA
TACATTCCGCTAATTCAGAAATAATGATGATGATGAATTTAGAATTTTTTGATGGGCTAA
TTATTTACTTAATTTCTTTTTTGGTTTTGTAACTTTATTTTTATGATGTGAATGAACAAA
TAAAAATTTTTTATTACTTTTTTTGATTTTTATTGGTGCTATAATAAAATTTTGTTATTA
CTAAATTTTCTTTTACAGTGACTTGAAAATTTTATTTATAA
>g991.t2 Gene=g991 Length=489
MWVKAVDTVLDRMVLQGANFTSVLAISGSAQQHGSVYWNQHGIDKLQNLDPDMFLYNQIN
SDAFAVKKSPIWMDSSTTKQCKEMEEAVGGRDEMVKITGSKCYERFTAAQIRKIFQQQRD
AYDNTVRISLVSSFLASIFLNKIAPIDYSDGSGMNLLDINERRWSQKCLDACADGVEEKL
GQPVPTASILGKIGTFFVQRYNFSTSTKVIAFTGDNASAVAGLNIHDDWLAFSLGTSDTI
MLSLNHHPCFTDGHVLIHPTKENGFMGLLCFKNGALVRDTFKKAEANNSWEIFTECLQNS
PRGNNGYMALHYLSQEILPNVPAGSLRWCALDTYENHSKRQPLIQFPVQQIEIRALIEGQ
MLNRKAFAMDMGFNFGENTKILATGGSSMNSAILQVMSDVFNSPVYIQKTPEAACLGAAY
RAKYVLYMETAKENGDTYENYHDYIKKYCDMKHYYIHRVVEPHGDSKIIYEPMLKRYREM
VQVMLDRQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g991.t2 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 455 | 0 |
| 8 | g991.t2 | Gene3D | G3DSA:3.30.420.40 | - | 224 | 477 | 0 |
| 3 | g991.t2 | PANTHER | PTHR10196:SF57 | XYLULOSE KINASE | 1 | 484 | 0 |
| 4 | g991.t2 | PANTHER | PTHR10196 | SUGAR KINASE | 1 | 484 | 0 |
| 2 | g991.t2 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 70 | 222 | 0 |
| 1 | g991.t2 | Pfam | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain | 231 | 423 | 0 |
| 5 | g991.t2 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 4 | 224 | 0 |
| 6 | g991.t2 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 225 | 484 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
