General information for g9918.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Bromodomain-containing protein 7.
Parent gene
- The parent gene g9918 is located on chr_1: 6043980..6046354 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9918 | g9918.t1 | TTS | g9918.t1 | 6043909 | 6043909 |
| chr_1 | g9918 | g9918.t1 | isoform | g9918.t1 | 6043980 | 6046354 |
| chr_1 | g9918 | g9918.t1 | exon | g9918.t1.exon1 | 6043980 | 6044676 |
| chr_1 | g9918 | g9918.t1 | cds | g9918.t1.CDS1 | 6043980 | 6044676 |
| chr_1 | g9918 | g9918.t1 | exon | g9918.t1.exon2 | 6044733 | 6046185 |
| chr_1 | g9918 | g9918.t1 | cds | g9918.t1.CDS2 | 6044733 | 6046185 |
| chr_1 | g9918 | g9918.t1 | exon | g9918.t1.exon3 | 6046288 | 6046354 |
| chr_1 | g9918 | g9918.t1 | cds | g9918.t1.CDS3 | 6046288 | 6046354 |
| chr_1 | g9918 | g9918.t1 | TSS | g9918.t1 | 6046452 | 6046452 |
Sequences
>g9918.t1 Gene=g9918 Length=2217
ATGGGTTCCTCAAAAGAACATAAAAAGCATAAAAAACATAAATCAGAAAAAAAATCAAAA
TATGATGAACGACCACCAAGTTTAAAATTAATTCTGAAAGTAAACGGTACACCCGAATAT
GGATATGGAGCAGATTCTCCTTATCAAATTAACAATTTGCCAGAGAATGAGCATTATAGT
GGTGAAAAGCATAAGAAATCGAAAAAGAAAAAGAAGAAAAAGGATCGTGAGAAGAAGCAT
AAACATCATAAAAAAGACCGACATCATAGACATGAGTCGAGTATGGATGATTCGAGCATG
CTTATGGATGAAGATGCAAGACAGAGTGTTGGTGAAAATATGCAACACTACTATTCCTCA
ATGGCATCATCTTCTGCAATCTCAAGCCCGATTACAAAACCCATGACTCCATTAACTCCT
GAACAACAGCAACAAAAGAGTTTTCATGTTTTACAAAATGTTCCAATTGCTGTTGAACCC
GCAAAACTCGAAATTCCATCTGCACAATTATCAATGCATCAGCAACTTTCTCCAATGACC
TCATCAGAGGCTGGTCGTGAACCACGCTCTTGTGTACTTAAATTAAAACAATCACGAAGT
CCTCTTGCAAAGCTCATTGATAATCTATTGAAAACATTGGAGAAACGCGATCCTCATCAA
TTTTTTGCTTGGCCTGTAACTGATGATATTGCTCCAGGTTATTCTTCAATCATTACTCGA
CCAATGGATTTTAGTACAATTAGACAGAAGAATGAGGAAAATAAATATACAACGTTGCAA
GAATTTTCAGAGGATTTTCAATTAATGTGTGACAATGCAATCAGATACAATCATCATGAA
ACAGTTTATAACAAAGCTGCTCGTCGACTTCTTCAAGCAGGAATGCGTTTGTTTCAACCA
GAAAATCTTGTTAGAGGACCCTATACTACTTTTATCAAAGATTTATCTATAAAAGAATTG
GGTTTCGATCCTACAATAAAACTTGAACATCATCATCACGATGAAGCATACAGTATTGAT
TCTGCTGAAGCAGATGATCAGGATCAGATTGATCCATTGCAAGAAGAGAGAGATAGACGT
GAACGTATGAAAATTGAAAATGATCCGAAAACACAATTTGAACCATTTGTAGATCCACTT
ACAGCAGATGAAGTACTTGAACAAGTACAAAAAGCAGCAAGAGAAGCAAAAGCAAAATTA
CACAAAAGAAAAGCTCATAGTATGGGTTTTTTGAGAACTCATGCAGATGGCACAACTTCA
ATGAAGATCATTTTATCATCAGAGGAAGGTGTTCCCGAGAAAACCAAGAAACTTGGTGAG
TTTACTGGTAAGCTTGAAAAAGGTACTGGATTGCTACAAAGCTTTCGTGAGGACCGACGT
AATACAGCTAAATTACCAAAGCCACTCAATTATGGCTCATTTACATCATTTGCACCAACA
TTCGACACTCGTTTTACAAATTTGTCAGTTGAGGAAACTGAATTAATTCTCAATACTTAT
GGAAATGAAGATGGTGCTAGTTATGCAGCATCAATTACAAGATTTACTGAAGATTCACCA
TATGGCAGTACATTGGCAAATAAATTGTTAGATTTACTTACACATGGTGAACATAGTAAA
ACAATGGAGACACTTATGGAATCTGAACAAATTAAGCAAACTGAAAAAGAAGTGACAAAA
CTTTTGCCTGATTATCAAAAGGAATCAAAAAATCTTGAAAATGTTACTGTAAATTTTGAT
GAGTTGAAATCATTGAAAGAAATTGGAATCGATACAAGTTTCTTGAATAGCTTTGAAAAA
GTTATTCATGGCAATGCAACTGAAAGCGTAAATAATTTACAAAATAAACTTGACACTACT
TCATCGCTTTTGGAACAATTACATCATGTTCAGAACGAACGTTTATCTGCTCCTTTACCA
CAACATTTAAGTCTTGTTCAGCAACCAAATAATCAAGAAACCGACTTAGCTGATCAGATT
ACATCAAATTTGACTGATATTGCAAAGAAATTACCACCGAGTGCAATTTCATCTGTGTCA
GCAGTTCGAAAAGTAATGGGAATAAATTTACCATCTGAGAGTGATTTTAGAAAAGCACCA
AAATATCCATCGAGTGGTAAAACAATTGATGTAGATGCAACTGAAGTTGATATGGAATTA
GAACCAACTGCAACAGAATTTGACAATGAAATAAGACAGCTTCTTGGAACAGACTAA
>g9918.t1 Gene=g9918 Length=738
MGSSKEHKKHKKHKSEKKSKYDERPPSLKLILKVNGTPEYGYGADSPYQINNLPENEHYS
GEKHKKSKKKKKKKDREKKHKHHKKDRHHRHESSMDDSSMLMDEDARQSVGENMQHYYSS
MASSSAISSPITKPMTPLTPEQQQQKSFHVLQNVPIAVEPAKLEIPSAQLSMHQQLSPMT
SSEAGREPRSCVLKLKQSRSPLAKLIDNLLKTLEKRDPHQFFAWPVTDDIAPGYSSIITR
PMDFSTIRQKNEENKYTTLQEFSEDFQLMCDNAIRYNHHETVYNKAARRLLQAGMRLFQP
ENLVRGPYTTFIKDLSIKELGFDPTIKLEHHHHDEAYSIDSAEADDQDQIDPLQEERDRR
ERMKIENDPKTQFEPFVDPLTADEVLEQVQKAAREAKAKLHKRKAHSMGFLRTHADGTTS
MKIILSSEEGVPEKTKKLGEFTGKLEKGTGLLQSFREDRRNTAKLPKPLNYGSFTSFAPT
FDTRFTNLSVEETELILNTYGNEDGASYAASITRFTEDSPYGSTLANKLLDLLTHGEHSK
TMETLMESEQIKQTEKEVTKLLPDYQKESKNLENVTVNFDELKSLKEIGIDTSFLNSFEK
VIHGNATESVNNLQNKLDTTSSLLEQLHHVQNERLSAPLPQHLSLVQQPNNQETDLADQI
TSNLTDIAKKLPPSAISSVSAVRKVMGINLPSESDFRKAPKYPSSGKTIDVDATEVDMEL
EPTATEFDNEIRQLLGTD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g9918.t1 | Gene3D | G3DSA:1.20.920.10 | Histone Acetyltransferase; Chain A | 197 | 306 | 5.3E-30 |
| 11 | g9918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - |
| 15 | g9918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - |
| 14 | g9918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 89 | - |
| 13 | g9918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 371 | - |
| 12 | g9918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 371 | - |
| 3 | g9918.t1 | PANTHER | PTHR22881:SF12 | BROMODOMAIN-CONTAINING PROTEIN 7 | 8 | 693 | 1.8E-100 |
| 4 | g9918.t1 | PANTHER | PTHR22881 | BROMODOMAIN CONTAINING PROTEIN | 8 | 693 | 1.8E-100 |
| 7 | g9918.t1 | PRINTS | PR00503 | Bromodomain signature | 231 | 247 | 1.2E-9 |
| 6 | g9918.t1 | PRINTS | PR00503 | Bromodomain signature | 247 | 265 | 1.2E-9 |
| 5 | g9918.t1 | PRINTS | PR00503 | Bromodomain signature | 265 | 284 | 1.2E-9 |
| 2 | g9918.t1 | Pfam | PF00439 | Bromodomain | 207 | 288 | 4.9E-21 |
| 1 | g9918.t1 | Pfam | PF12024 | Domain of unknown function (DUF3512) | 373 | 550 | 2.0E-60 |
| 16 | g9918.t1 | ProSiteProfiles | PS50014 | Bromodomain profile. | 214 | 284 | 15.963 |
| 10 | g9918.t1 | SMART | SM00297 | bromo_6 | 195 | 303 | 8.2E-27 |
| 8 | g9918.t1 | SUPERFAMILY | SSF47370 | Bromodomain | 182 | 299 | 3.79E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K11723 (bromodomain-containing protein 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
