General information for g9923.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ethanolamine kinase.
Parent gene
- The parent gene g9923 is located on chr_1: 6055381..6058924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9923 | g9923.t3 | TSS | g9923.t3 | 6054370 | 6054370 |
| chr_1 | g9923 | g9923.t3 | isoform | g9923.t3 | 6054459 | 6055914 |
| chr_1 | g9923 | g9923.t3 | exon | g9923.t3.exon1 | 6054459 | 6054563 |
| chr_1 | g9923 | g9923.t3 | cds | g9923.t3.CDS1 | 6054459 | 6054563 |
| chr_1 | g9923 | g9923.t3 | exon | g9923.t3.exon2 | 6054791 | 6055213 |
| chr_1 | g9923 | g9923.t3 | cds | g9923.t3.CDS2 | 6054791 | 6055213 |
| chr_1 | g9923 | g9923.t3 | exon | g9923.t3.exon3 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t3 | exon | g9923.t3.exon4 | 6055854 | 6055914 |
| chr_1 | g9923 | g9923.t3 | TTS | g9923.t3 | 6056378 | 6056378 |
Sequences
>g9923.t3 Gene=g9923 Length=1048
ATGGAAGAACTTCAAATCAGTGTCGATGAAAATAATTATGAAATAGCAATAAAAAAAATT
TTGAAGACAATCAGGCCAAATTGGAAAGACGATGATAAATTAAAATTAAAAACCTTTACT
GATGGAATTACTAATAAATTGATTGGTTGCTTCTACTCGGATATTCAAAGTAATTTTAAT
GACACTGTTTTAATAAGAATTTATGGCAATAAAACTGATTTATTGATTGATCGAAATGCT
GAAAAATTCAATATAAAATTACTACACAAAAATGGACTTGCCCCAGAACTTTATGCGACT
TTTTTAAATGGTATTTGTTATGAATATGTCCCAGGGATAACTTTAAATTCAAAAAGTGTT
TATGAACCAAAGATATGGAGACTAGTTGCAACGCACATGGCACACATGCATAAACTACCG
TTAAATTCTGAGCAAGCAAAAAAAGAACCAATGCTAAAGACTAAAACATTACAATTTTTA
AACTTGATTCCAAAAAAATTCTCTGATGCCAAAATGAACGAGAGGTAAGGTCGCAAATAT
ATTTCCATCAGTTTCAAAATTGCGCGAGGAATTTGACTCGTTATATGATGCACTTCAACG
AACAAATTCACCCGTACTATTCTGTCATAATGATTTATTGCTGGGCAATGTTATATATAC
AGAAGAAATTAATAAAGTGACATTTATCGATTATGAATATGCTGAACCTAATCATCAAGC
ATTTGACATAGGGAATCACTTTGCCGAATTTCCTGGTATTGGATCTAATTCATCCATTGA
CTATGAAAAATATCCGCCACGCGAATTTCAACTTCAATGGTTAAGAGTCTATCTCGAAGA
ATATCATAAAAATTCGACAATAAGTGATGAAAGCGTTGAAGAACTTTACAAGCAAGTTAA
TAAATTTGCTTTAGCATCACATTTTTTATGGACATGTTGGAGTTTGATTCAGGCAGAACA
TTCGACAATAGATTTTGATTTTATTGCATTTGGAGCAAGTCGTTACAACGAATATTTAGC
GAAAAAAGATGTTTTCTTGAATCTTTAA
>g9923.t3 Gene=g9923 Length=175
MEELQISVDENNYEIAIKKILKTIRPNWKDDDKLKLKTFTDGITNKLIGCFYSDIQSNFN
DTVLIRIYGNKTDLLIDRNAEKFNIKLLHKNGLAPELYATFLNGICYEYVPGITLNSKSV
YEPKIWRLVATHMAHMHKLPLNSEQAKKEPMLKTKTLQFLNLIPKKFSDAKMNER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9923.t3 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 25 | 109 | 0 |
| 6 | g9923.t3 | Gene3D | G3DSA:3.90.1200.10 | - | 69 | 173 | 0 |
| 2 | g9923.t3 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 3 | 175 | 0 |
| 3 | g9923.t3 | PANTHER | PTHR22603:SF87 | ETHANOLAMINE KINASE 1 | 3 | 175 | 0 |
| 1 | g9923.t3 | Pfam | PF01633 | Choline/ethanolamine kinase | 61 | 160 | 0 |
| 4 | g9923.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 170 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00894 (ethanolamine kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
