General information for g9923.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ethanolamine kinase.
Parent gene
- The parent gene g9923 is located on chr_1: 6055381..6058924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9923 | g9923.t5 | TSS | g9923.t5 | 6054370 | 6054370 |
| chr_1 | g9923 | g9923.t5 | isoform | g9923.t5 | 6054459 | 6055914 |
| chr_1 | g9923 | g9923.t5 | exon | g9923.t5.exon1 | 6054459 | 6054567 |
| chr_1 | g9923 | g9923.t5 | exon | g9923.t5.exon2 | 6054791 | 6055209 |
| chr_1 | g9923 | g9923.t5 | cds | g9923.t5.CDS1 | 6055082 | 6055209 |
| chr_1 | g9923 | g9923.t5 | exon | g9923.t5.exon3 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t5 | cds | g9923.t5.CDS2 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t5 | exon | g9923.t5.exon4 | 6055854 | 6055914 |
| chr_1 | g9923 | g9923.t5 | cds | g9923.t5.CDS3 | 6055854 | 6055914 |
| chr_1 | g9923 | g9923.t5 | TTS | g9923.t5 | 6056378 | 6056378 |
Sequences
>g9923.t5 Gene=g9923 Length=1048
ATGGAAGAACTTCAAATCAGTGTCGATGAAAATAATTATGAAATAGCAATAAAAAAAATT
TTGAAGACAATCAGGCCAAATTGGAAAGACGATGATAAATTAAAAGTAATTAAAAACCTT
TACTGATGGAATTACTAATAAATTGATTGGTTGCTTCTACTCGGATATTCAAAGTAATTT
TAATGACACTGTTTTAATAAGAATTTATGGCAATAAAACTGATTTATTGATTGATCGAAA
TGCTGAAAAATTCAATATAAAATTACTACACAAAAATGGACTTGCCCCAGAACTTTATGC
GACTTTTTTAAATGGTATTTGTTATGAATATGTCCCAGGGATAACTTTAAATTCAAAAAG
TGTTTATGAACCAAAGATATGGAGACTAGTTGCAACGCACATGGCACACATGCATAAACT
ACCGTTAAATTCTGAGCAAGCAAAAAAAGAACCAATGCTAAAGACTAAAACATTACAATT
TTTAAACTTGATTCCAAAAAAATTCTCTGATGCCAAAATGAACGAGAGGGTCGCAAATAT
ATTTCCATCAGTTTCAAAATTGCGCGAGGAATTTGACTCGTTATATGATGCACTTCAACG
AACAAATTCACCCGTACTATTCTGTCATAATGATTTATTGCTGGGCAATGTTATATATAC
AGAAGAAATTAATAAAGTGACATTTATCGATTATGAATATGCTGAACCTAATCATCAAGC
ATTTGACATAGGGAATCACTTTGCCGAATTTCCTGGTATTGGATCTAATTCATCCATTGA
CTATGAAAAATATCCGCCACGCGAATTTCAACTTCAATGGTTAAGAGTCTATCTCGAAGA
ATATCATAAAAATTCGACAATAAGTGATGAAAGCGTTGAAGAACTTTACAAGCAAGTTAA
TAAATTTGCTTTAGCATCACATTTTTTATGGACATGTTGGAGTTTGATTCAGGCAGAACA
TTCGACAATAGATTTTGATTTTATTGCATTTGGAGCAAGTCGTTACAACGAATATTTAGC
GAAAAAAGATGTTTTCTTGAATCTTTAA
>g9923.t5 Gene=g9923 Length=215
MAHMHKLPLNSEQAKKEPMLKTKTLQFLNLIPKKFSDAKMNERVANIFPSVSKLREEFDS
LYDALQRTNSPVLFCHNDLLLGNVIYTEEINKVTFIDYEYAEPNHQAFDIGNHFAEFPGI
GSNSSIDYEKYPPREFQLQWLRVYLEEYHKNSTISDESVEELYKQVNKFALASHFLWTCW
SLIQAEHSTIDFDFIAFGASRYNEYLAKKDVFLNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9923.t5 | Gene3D | G3DSA:3.90.1200.10 | - | 1 | 211 | 0 |
| 2 | g9923.t5 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 1 | 213 | 0 |
| 3 | g9923.t5 | PANTHER | PTHR22603:SF76 | ETHANOLAMINE KINASE 2 | 1 | 213 | 0 |
| 1 | g9923.t5 | Pfam | PF01633 | Choline/ethanolamine kinase | 1 | 134 | 0 |
| 4 | g9923.t5 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 212 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
